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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0195300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin-like F-box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.16 (0.0682) R2 : 0.736
β1 : -7.68 (0.327) R2dD : 0.933 R2D : 0.414
β2 : 1.92 (0.133) R2dC : 0.122 R2C : 0.111
β3 : 2.12 (0.254) R2dE : 0.0646 R2E : -0.107
β4 : -4.42 (0.547) R2dD*C : 0.038 R2D*C : 0.0394
β5 : -6.05 (1.09) R2dD*E : 0.062 R2D*E : -0.214
γ1 : -0.15 (0.141) R2dN8 : 0.00135 R2N8 : -0.0241
σ : 1
deviance : 456.23
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_____
C
peak time of C : 15
E
wheather : temperature
threshold : 7.219
memory length : 5668
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
456.23 1 6.16 -7.68 1.92 2.12 -4.42 -6.05 -0.15 15 7.219 5668 -- --
478.73 1.02 6.05 -7.21 1.88 2.72 -4.03 -- -0.303 15 10.72 13195 -- --
513.89 1.06 6.07 -7.15 1.32 2.24 -- -10.7 0.0236 15.6 7.847 5981 -- --
537.41 1.08 6.06 -7.17 1.88 2.71 -- -- -0.315 15.1 10.56 13068 -- --
581.77 1.13 6.11 -7.42 -- 3.65 -- -10.3 -0.186 -- 12.39 4749 -- --
590.06 1.14 5.81 -5.19 1.84 -- -4.35 -- 0.74 15 -- -- -- --
653.54 1.2 5.83 -5.28 1.83 -- -- -- 0.715 15.1 -- -- -- --
672.67 1.21 5.94 -5.99 -- 3.46 -- -- 0.207 -- 10.56 13068 -- --
767.54 1.29 5.76 -- 1.91 -3.27 -- -- 1 15.2 35.1 47520 -- --
844.71 1.36 5.83 -5.36 -- -- -- -- 0.667 -- -- -- -- --
1389.2 1.74 5.69 -- 1.93 -- -- -- 1.3 15.1 -- -- -- --
977.64 1.46 5.77 -- -- -3.28 -- -- 0.954 -- 35.1 47520 -- --
1602.88 1.87 5.7 -- -- -- -- -- 1.26 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 422.26 humidity 80 43200 < th dose independent rect. 22 1
2 425.40 wind 5 43200 < th dose independent rect. 15 18
5 425.76 wind 5 43200 > th dose independent rect. 15 18
10 426.32 humidity 80 43200 > th dose independent rect. 22 1
13 426.40 wind 3 43200 > th dose dependent rect. 15 17
25 426.88 wind 3 43200 > th dose dependent rect. 5 1
35 427.31 wind 3 43200 > th dose dependent rect. 15 22
52 427.92 wind 5 43200 < th dose independent sin 13 NA
57 428.15 humidity 80 43200 > th dose independent rect. 5 2
60 428.29 wind 5 43200 > th dose independent sin 13 NA
77 428.76 wind 3 43200 > th dose dependent sin 13 NA
89 428.97 wind 9 43200 < th dose dependent rect. 16 21
96 429.09 wind 3 43200 > th dose dependent rect. 12 22
112 429.39 wind 7 43200 < th dose dependent sin 3 NA
121 429.52 wind 7 43200 < th dose dependent rect. 24 16
125 429.57 wind 9 43200 < th dose dependent rect. 24 18
130 429.61 wind 3 43200 > th dose dependent rect. 24 23
135 429.64 humidity 80 43200 < th dose independent rect. 22 10
140 429.65 wind 3 43200 > th dose dependent rect. 21 22
145 429.70 wind 5 43200 < th dose independent rect. 18 23
148 429.75 wind 5 43200 < th dose independent rect. 5 1
157 429.79 wind 7 43200 < th dose dependent rect. 3 13
165 429.82 wind 3 43200 > th dose dependent no NA NA
168 429.85 humidity 80 43200 < th dose independent rect. 4 4
169 429.85 wind 5 43200 < th dose independent rect. 24 23
184 429.95 wind 5 43200 < th dose independent no NA NA
205 430.05 wind 5 43200 > th dose independent rect. 18 23
209 430.07 wind 5 43200 < th dose independent rect. 21 23
216 430.11 wind 9 43200 < th dose dependent rect. 24 22
218 430.14 wind 3 43200 > th dose dependent rect. 3 23
219 430.15 wind 5 43200 > th dose independent rect. 24 23
230 430.21 wind 3 43200 > th dose dependent rect. 24 19
237 430.26 wind 5 43200 > th dose independent no NA NA
254 430.34 wind 3 43200 > th dose dependent rect. 7 23
256 430.35 wind 5 43200 < th dose independent rect. 6 23
261 430.37 wind 5 43200 > th dose independent rect. 21 23
288 430.49 wind 1 43200 > th dose dependent rect. 24 16
309 430.57 wind 5 43200 > th dose independent rect. 6 23
342 430.73 wind 9 43200 < th dose dependent rect. 21 21
344 430.74 wind 1 43200 > th dose dependent sin 4 NA
459 431.21 wind 9 43200 < th dose dependent rect. 11 23
470 431.24 wind 9 43200 < th dose dependent rect. 3 23
492 431.32 wind 9 43200 < th dose dependent no NA NA
601 431.67 wind 5 43200 > th dose independent rect. 5 2
643 431.82 wind 9 43200 < th dose dependent rect. 7 23
729 432.09 humidity 80 43200 > th dose independent rect. 22 10
817 432.44 wind 7 43200 > th dose dependent rect. 4 1
838 432.51 wind 5 43200 < th dose independent sin 4 NA
845 432.53 wind 3 43200 > th dose independent rect. 3 10
910 432.76 wind 3 43200 < th dose independent rect. 3 10
960 432.97 humidity 60 43200 > th dose independent rect. 15 19
965 433.00 wind 5 43200 > th dose independent sin 4 NA
966 433.00 wind 3 43200 > th dose independent rect. 3 4