BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0148400 Os07g0148400|AK067911
(106 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0148400 Chromo domain containing protein 207 2e-54
Os04g0682600 Integrase, catalytic region domain containing ... 84 3e-17
Os06g0266100 Integrase, catalytic region domain containing ... 80 3e-16
Os04g0283700 Chromo domain containing protein 76 6e-15
Os12g0428300 Retrotransposon gag protein family protein 69 8e-13
Os03g0377400 Chromo domain containing protein 66 5e-12
Os07g0195900 65 2e-11
>Os07g0148400 Chromo domain containing protein
Length = 106
Score = 207 bits (526), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 106/106 (100%), Positives = 106/106 (100%)
Query: 1 MAPEEVVPVQVLARRVSKKGAGAVEQVLVRWTGQSSSEATWEDAAALRLRFPDAPAWGQA 60
MAPEEVVPVQVLARRVSKKGAGAVEQVLVRWTGQSSSEATWEDAAALRLRFPDAPAWGQA
Sbjct: 1 MAPEEVVPVQVLARRVSKKGAGAVEQVLVRWTGQSSSEATWEDAAALRLRFPDAPAWGQA 60
Query: 61 AFEGGRNVTGAATVSEPVRENNPVKSGKRPQRERRPNVRVSGPEWS 106
AFEGGRNVTGAATVSEPVRENNPVKSGKRPQRERRPNVRVSGPEWS
Sbjct: 61 AFEGGRNVTGAATVSEPVRENNPVKSGKRPQRERRPNVRVSGPEWS 106
>Os04g0682600 Integrase, catalytic region domain containing protein
Length = 395
Score = 83.6 bits (205), Expect = 3e-17, Method: Composition-based stats.
Identities = 39/100 (39%), Positives = 62/100 (62%), Gaps = 3/100 (3%)
Query: 7 VPVQVLARRVSKKGAGAVEQVLVRWTGQSSSEATWEDAAALRLRFPDAPAWGQAAFEGGR 66
+P+++L R ++G+ ++QVL+RW+G SSS TWE ++ +FP APAWGQA +GGR
Sbjct: 297 IPIKILDHRSIRRGSKMIKQVLIRWSGVSSSADTWESLDEMQAKFPAAPAWGQAETQGGR 356
Query: 67 NVTGAATVSEPVRENNPVKSGKRPQRERRPNVRVSGPEWS 106
NVT + + N+ + +R +RE N + G +WS
Sbjct: 357 NVTASI---QSTTHNSSIIGPRRSKREVHTNPKYMGCDWS 393
>Os06g0266100 Integrase, catalytic region domain containing protein
Length = 399
Score = 80.1 bits (196), Expect = 3e-16, Method: Composition-based stats.
Identities = 45/111 (40%), Positives = 61/111 (54%), Gaps = 13/111 (11%)
Query: 8 PVQVLARRVSKKGAGAVEQVLVRWTGQSSSEATWEDAAALRLRFPDAPAWGQAAFEGGRN 67
P+ +L R+ KKG V QVL++W+ + +ATWED LR RFP+A AWGQA F+ G
Sbjct: 289 PIMLLDNRLIKKGNTTVSQVLIQWSDTAVEDATWEDLEDLRARFPEALAWGQATFQ-GEG 347
Query: 68 VTGAATVSEPVR----ENNPVKSGK--------RPQRERRPNVRVSGPEWS 106
+ A+ EP + PV G+ RP R RPN + GPEW+
Sbjct: 348 IVKASGEEEPSASAKLKMKPVPDGEQEGGEEDLRPARVIRPNRKYVGPEWA 398
>Os04g0283700 Chromo domain containing protein
Length = 258
Score = 75.9 bits (185), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 61/118 (51%), Gaps = 19/118 (16%)
Query: 7 VPVQVLARRVSKKGAGAVEQVLVRWTGQSSSEATWEDAAALRLRFPDAPAWGQAAFEG-- 64
VP ++L RR++KKG + QVLV+W+ +ATWED L RFP A AWGQA +G
Sbjct: 116 VPWRILDRRLAKKGNSTISQVLVQWSESPPEDATWEDYEELHARFPAALAWGQANSQGVG 175
Query: 65 -----------GRNVTGAATVSEPVRENNPVKS------GKRPQRERRPNVRVSGPEW 105
G + G +E + +S G RP RERRPN RV GPEW
Sbjct: 176 LVRDSPLSTVEGGAIGGKDLNAEEEEDVQTSQSDISTGNGHRPVRERRPNPRVLGPEW 233
>Os12g0428300 Retrotransposon gag protein family protein
Length = 545
Score = 68.9 bits (167), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 43/68 (63%)
Query: 5 EVVPVQVLARRVSKKGAGAVEQVLVRWTGQSSSEATWEDAAALRLRFPDAPAWGQAAFEG 64
+++P VL RR+ KKG A+ QVLV+W + ATWED +R RFPDA AWGQA G
Sbjct: 478 DLIPSAVLERRLVKKGNAAIVQVLVQWGSLPPALATWEDYDVVRTRFPDAVAWGQAPIGG 537
Query: 65 GRNVTGAA 72
G VT A
Sbjct: 538 GEPVTAVA 545
>Os03g0377400 Chromo domain containing protein
Length = 257
Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 41/65 (63%)
Query: 5 EVVPVQVLARRVSKKGAGAVEQVLVRWTGQSSSEATWEDAAALRLRFPDAPAWGQAAFEG 64
+V P ++L RR+ KKG QVL++W+ + +ATWED L+ RFP APAWGQA
Sbjct: 188 DVWPEEILDRRLVKKGNATHVQVLIKWSSLPAHQATWEDYEVLKTRFPSAPAWGQAVSPA 247
Query: 65 GRNVT 69
G VT
Sbjct: 248 GGTVT 252
>Os07g0195900
Length = 527
Score = 64.7 bits (156), Expect = 2e-11, Method: Composition-based stats.
Identities = 34/76 (44%), Positives = 42/76 (55%)
Query: 5 EVVPVQVLARRVSKKGAGAVEQVLVRWTGQSSSEATWEDAAALRLRFPDAPAWGQAAFEG 64
E++P +L R++ KKG AV QV V W ATWED L RFP APAWGQA
Sbjct: 449 ELLPTAILDRQMVKKGNAAVVQVKVLWGTLQDHFATWEDYEVLCTRFPLAPAWGQACAPA 508
Query: 65 GRNVTGAATVSEPVRE 80
G NV A ++ +E
Sbjct: 509 GGNVISQAMTTDEEQE 524
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.311 0.127 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,975,866
Number of extensions: 157097
Number of successful extensions: 466
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 464
Number of HSP's successfully gapped: 8
Length of query: 106
Length of database: 17,035,801
Length adjustment: 74
Effective length of query: 32
Effective length of database: 13,171,965
Effective search space: 421502880
Effective search space used: 421502880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 149 (62.0 bits)