Os07g0148400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Chromo domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os07g0148400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Chromo domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.93 | 0.235 | 9.73 | 0.153 | 0.236 | -0.886 | -1.02 | 0.182 | 0.215 | 17.9 | 20.9 | 1282 | -- | -- |
| 25 | 0.233 | 9.73 | 0.114 | 0.234 | -0.889 | -1.02 | -- | 0.208 | 17.9 | 20.8 | 1245 | -- | -- |
| 26.98 | 0.242 | 9.73 | 0.164 | 0.253 | -0.884 | -- | 0.219 | 0.214 | 19.3 | 20.73 | 1098 | -- | -- |
| 27.09 | 0.242 | 9.74 | 0.108 | 0.261 | -0.895 | -- | -- | 0.193 | 19.3 | 20.71 | 1098 | -- | -- |
| 30.14 | 0.256 | 9.72 | 0.179 | -- | -0.92 | -- | 0.236 | 0.212 | -- | 20.78 | 1285 | -- | -- |
| 45.61 | 0.317 | 9.78 | -0.261 | 0.26 | -- | -1.2 | -- | -0.0155 | 17.4 | -- | -- | -- | -- |
| 49.13 | 0.328 | 9.79 | -0.258 | 0.254 | -- | -- | -- | -0.0211 | 17.8 | -- | -- | -- | -- |
| 30.22 | 0.256 | 9.73 | 0.14 | -- | -0.979 | -- | -- | 0.196 | -- | 20.51 | 1305 | -- | -- |
| 27.37 | 0.244 | 9.74 | -- | 0.262 | -0.866 | -- | -- | 0.179 | 19.3 | 20.8 | 1094 | -- | -- |
| 52.48 | 0.338 | 9.78 | -0.266 | -- | -- | -- | -- | -0.0271 | -- | -- | -- | -- | -- |
| 50.89 | 0.334 | 9.78 | -- | 0.258 | -- | -- | -- | 0.00769 | 17.7 | -- | -- | -- | -- |
| 30.62 | 0.258 | 9.74 | -- | -- | -0.908 | -- | -- | 0.174 | -- | 20.65 | 1275 | -- | -- |
| 54.35 | 0.344 | 9.77 | -- | -- | -- | -- | -- | 0.00247 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.02 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 12 |
| 3 | 24.05 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 13 |
| 26 | 24.35 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 27 | 24.35 | temperature | 20 | 1440 | < th | dose independent | sin | 11 | NA |
| 49 | 24.44 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 17 |
| 118 | 24.76 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 4 |
| 196 | 25.01 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 199 | 25.02 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 4 |
| 209 | 25.04 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 227 | 25.08 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 261 | 25.17 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 22 |
| 273 | 25.20 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 11 |
| 278 | 25.21 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 16 |
| 351 | 25.36 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 6 |
| 447 | 25.51 | temperature | 25 | 1440 | < th | dose dependent | sin | 12 | NA |
| 448 | 25.51 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 466 | 25.53 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 5 |
| 520 | 25.60 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 7 |
| 737 | 25.85 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 803 | 25.93 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 862 | 26.01 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 887 | 26.04 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 934 | 26.11 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 23 |