BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0147800 Os07g0147800|Os07g0147800
(780 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0147800 Conserved hypothetical protein 1578 0.0
Os03g0784500 Conserved hypothetical protein 320 3e-87
Os12g0612300 Conserved hypothetical protein 235 1e-61
Os09g0133800 Conserved hypothetical protein 113 7e-25
>Os07g0147800 Conserved hypothetical protein
Length = 780
Score = 1578 bits (4087), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 767/780 (98%), Positives = 767/780 (98%)
Query: 1 MAGIQPVLDERMDPFTGRMIIPASTCQSRCTAHNDLSLFSGPLIDRTXXXXXXXXXXXXX 60
MAGIQPVLDERMDPFTGRMIIPASTCQSRCTAHNDLSLFSGPLIDRT
Sbjct: 1 MAGIQPVLDERMDPFTGRMIIPASTCQSRCTAHNDLSLFSGPLIDRTSSSSISEFNSEAE 60
Query: 61 KFNDLEVPPPWLLSYHRSCDIGSNFEAFATVMSRLRQHLLDANVEINYTEYLDLMKLEVE 120
KFNDLEVPPPWLLSYHRSCDIGSNFEAFATVMSRLRQHLLDANVEINYTEYLDLMKLEVE
Sbjct: 61 KFNDLEVPPPWLLSYHRSCDIGSNFEAFATVMSRLRQHLLDANVEINYTEYLDLMKLEVE 120
Query: 121 QHLNKLKEDIRFLKSHSLVHDGDANGSCPMVCHHGKLVEIYEGFNGFKLLLVVVFRQIKE 180
QHLNKLKEDIRFLKSHSLVHDGDANGSCPMVCHHGKLVEIYEGFNGFKLLLVVVFRQIKE
Sbjct: 121 QHLNKLKEDIRFLKSHSLVHDGDANGSCPMVCHHGKLVEIYEGFNGFKLLLVVVFRQIKE 180
Query: 181 MLSLFSASIRDLQWEHEMQLEVTSIMIGDCIKSLQDELERKLYEQSSIVNTLKKNWKETV 240
MLSLFSASIRDLQWEHEMQLEVTSIMIGDCIKSLQDELERKLYEQSSIVNTLKKNWKETV
Sbjct: 181 MLSLFSASIRDLQWEHEMQLEVTSIMIGDCIKSLQDELERKLYEQSSIVNTLKKNWKETV 240
Query: 241 VQCGAIHEELIDIADMLLPSEEESNILNSKHEHFGNWSSGWKHKFFGKKSGEERTPSSNE 300
VQCGAIHEELIDIADMLLPSEEESNILNSKHEHFGNWSSGWKHKFFGKKSGEERTPSSNE
Sbjct: 241 VQCGAIHEELIDIADMLLPSEEESNILNSKHEHFGNWSSGWKHKFFGKKSGEERTPSSNE 300
Query: 301 ENISSATQKSVCPREVISEKSDFRHLKGMNREEMIKYFRFEISKLKRLHELSLQEKTEEL 360
ENISSATQKSVCPREVISEKSDFRHLKGMNREEMIKYFRFEISKLKRLHELSLQEKTEEL
Sbjct: 301 ENISSATQKSVCPREVISEKSDFRHLKGMNREEMIKYFRFEISKLKRLHELSLQEKTEEL 360
Query: 361 FKFKREKGSLALKYDPEFEPLRKKVPEIISRVDQIILNTINAPTAFSTNQVLEERGRLTG 420
FKFKREKGSLALKYDPEFEPLRKKVPEIISRVDQIILNTINAPTAFSTNQVLEERGRLTG
Sbjct: 361 FKFKREKGSLALKYDPEFEPLRKKVPEIISRVDQIILNTINAPTAFSTNQVLEERGRLTG 420
Query: 421 RIDSLYYANQNLRGLLAEKMKDIKDLSRQVSDASRKMSFQLSLEEKLSRQLHKIKGDYED 480
RIDSLYYANQNLRGLLAEKMKDIKDLSRQVSDASRKMSFQLSLEEKLSRQLHKIKGDYED
Sbjct: 421 RIDSLYYANQNLRGLLAEKMKDIKDLSRQVSDASRKMSFQLSLEEKLSRQLHKIKGDYED 480
Query: 481 LHIQSTIRDEVYQTVTKRMFDDYRNSLQDPALTYQEKVTSLEAALSEKETALRLANEENQ 540
LHIQSTIRDEVYQTVTKRMFDDYRNSLQDPALTYQEKVTSLEAALSEKETALRLANEENQ
Sbjct: 481 LHIQSTIRDEVYQTVTKRMFDDYRNSLQDPALTYQEKVTSLEAALSEKETALRLANEENQ 540
Query: 541 RLKEKLSKQEKEHGIQNNQDYPELIKQDNEEMILRDIEMEPHVSPRRSYAISEQNAEYEE 600
RLKEKLSKQEKEHGIQNNQDYPELIKQDNEEMILRDIEMEPHVSPRRSYAISEQNAEYEE
Sbjct: 541 RLKEKLSKQEKEHGIQNNQDYPELIKQDNEEMILRDIEMEPHVSPRRSYAISEQNAEYEE 600
Query: 601 LIKLKQTLEIASTALKEVESNELDYNGILGKNEQEKQLEFILVSIMDLSKEFVQIENKMS 660
LIKLKQTLEIASTALKEVESNELDYNGILGKNEQEKQLEFILVSIMDLSKEFVQIENKMS
Sbjct: 601 LIKLKQTLEIASTALKEVESNELDYNGILGKNEQEKQLEFILVSIMDLSKEFVQIENKMS 660
Query: 661 GDMKGSEKGPEILGYQCKHMVQQALVLTKKGLWYKQMLDTRRSQLRKAEAEESIKVSKMV 720
GDMKGSEKGPEILGYQCKHMVQQALVLTKKGLWYKQMLDTRRSQLRKAEAEESIKVSKMV
Sbjct: 661 GDMKGSEKGPEILGYQCKHMVQQALVLTKKGLWYKQMLDTRRSQLRKAEAEESIKVSKMV 720
Query: 721 DVLGNKVSTLLSLVQKIYVTLEHYSPVFQQYPGLLDAFLKTCKLVAGLRSKQKEDLQDTS 780
DVLGNKVSTLLSLVQKIYVTLEHYSPVFQQYPGLLDAFLKTCKLVAGLRSKQKEDLQDTS
Sbjct: 721 DVLGNKVSTLLSLVQKIYVTLEHYSPVFQQYPGLLDAFLKTCKLVAGLRSKQKEDLQDTS 780
>Os03g0784500 Conserved hypothetical protein
Length = 273
Score = 320 bits (820), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 166/280 (59%), Positives = 216/280 (77%), Gaps = 11/280 (3%)
Query: 496 TKRMFDDYRNSLQDPALTYQEKVTSLEAALSEKETALRLANEENQRLKEKLSKQEKEHGI 555
T+++ DD NS+ D A + +++SLEA +SEKE AL L+NEEN+ LKEK+++ E + I
Sbjct: 1 TRKLLDDSMNSMHDAATNFSTELSSLEAMISEKEKALCLSNEENRMLKEKIAELE-QCLI 59
Query: 556 QNNQDYPELIKQDNEEMILRDIEMEPHVSPRRSYAISEQNAEYEELIKLKQTLEIASTAL 615
Q+ Q+ PE+IKQ++ E+ILRDIE+ PH+SPRRS+ +Q+ +Y+EL+KL +LEIAS AL
Sbjct: 60 QDKQEDPEVIKQESTEIILRDIEVAPHISPRRSHETPKQDMQYDELVKLNSSLEIASAAL 119
Query: 616 KEVESNELDYNGILGKNEQEKQLEFILVSIMDLSKEFVQIENKMSGDMKGSEKGPEILGY 675
KEVE+ +DYNGI KNEQEKQLE IL+SIM LSKEFV+IE K+S + S E L
Sbjct: 120 KEVENKNIDYNGIFTKNEQEKQLECILISIMKLSKEFVEIEQKLSVERSASR--SEDLSD 177
Query: 676 QCKHMVQQALVLTKKGLWYKQMLDTRRSQLRKAEAEESIKVSKMVDVLGNKVSTLLSLVQ 735
C HMV+QA+VLTK GLWYKQML+TRRS+L+KAEA+ V +LG+KV++ L+L+Q
Sbjct: 178 HCNHMVRQAVVLTKIGLWYKQMLETRRSELQKAEAK--------VVILGDKVNSHLNLLQ 229
Query: 736 KIYVTLEHYSPVFQQYPGLLDAFLKTCKLVAGLRSKQKED 775
KIYVTL+ YSP QQYPGLLDAFLKTCKLVAGLRS Q +D
Sbjct: 230 KIYVTLDRYSPTLQQYPGLLDAFLKTCKLVAGLRSNQNKD 269
>Os12g0612300 Conserved hypothetical protein
Length = 579
Score = 235 bits (599), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 193/590 (32%), Positives = 305/590 (51%), Gaps = 64/590 (10%)
Query: 195 EHEMQLEVTSIMIGDCIKSLQDELERKLYEQSSIVNTLKKNWKETVVQCGAIHEELIDIA 254
E+E+Q EV++IMI I S++ E E KL+E + ++TL KNWKE + + A+ +EL I
Sbjct: 8 EYELQKEVSNIMIQSYITSMRREFETKLWENQNCISTLNKNWKEKISKIAALRDELSTIY 67
Query: 255 DMLLPSEEESNILNSKHEHFGNWSSGWKHKFFGKKSGEERTPSSNEENISSATQKSVCPR 314
++ SE G +SS H+ K E ++N SS T+++
Sbjct: 68 SVVSASES------------GVFSSHGSHE----KVEELNFLKMKDDNESSITERTTDSG 111
Query: 315 EVISEKSDFRHLKGMNREEMIKYFRFEISKLKRLHELSLQEKTEELFKFKREKGS----L 370
E++ + DF LK M EE+ + + E KL+R HE L EKTEELF+ KRE L
Sbjct: 112 ELMFDIPDFSLLKHMPSEEVTNFLKSEWLKLRRQHESELHEKTEELFRLKREFAKDIALL 171
Query: 371 ALKYDPEFEPLRKKVPEIISRVDQIILNTINAPTAFSTNQVLEERGRLTGRIDSLYYANQ 430
+ + E E ++ K+ + IS++D+I T+ + N E RI SL + N+
Sbjct: 172 PSRKERELEIIKSKLLQSISKLDEI---TLREDNPYCDNYDDAEVCGFEDRIGSLLHENE 228
Query: 431 NLRGLLAEKMKDIKDLSRQVSDASRKMSFQLSLEE-KLSRQLHKIKGDYEDLHIQSTIRD 489
L+GLLA+K K LS QV DA RKM+ Q SL E KL +Q+ K+ + EDL I+S I+D
Sbjct: 229 QLQGLLADKKMVAKHLSLQVLDAERKMA-QHSLSELKLVKQVEKLSHELEDLKIESHIKD 287
Query: 490 EVYQTVTKRMFDDYRNSLQDPALTYQEKVTSLEAALSEKETALRLANEENQRLKEK---- 545
+ + + +FD+Y N + D ++ T L L EKE L + E+ Q+LK +
Sbjct: 288 LLELSTLREVFDNYENHIDDA----NQEETFLRELLIEKEEQLSIMYEDRQKLKYENNQL 343
Query: 546 --------LSKQEKEHGIQNNQDYPELIKQDNEEMILRDIEMEPHVSPRRSY-AISEQNA 596
+ E+ + + + ++ E + + +E+++ + + E + Y A+ + N
Sbjct: 344 VAIAGSTLMQHHEQVNLVNDLTNFREKVCE--QELLILESKSESNSMKSSLYEALQQINV 401
Query: 597 EYEELIKLKQTLEIASTALKEVESNELDYNGIL------------GKNEQEKQLEFILVS 644
+E+ L L S AL+E + + + Q LE+ LVS
Sbjct: 402 CKQEIHGLTDNLTAMSIALEEAKEQNASLDATIQEMKKTSAPSINSHKGQAGHLEYALVS 461
Query: 645 IMDLSKEFVQIENKMSGDMKGSEKGPEILGYQCKHMVQQALVLTKKGLWYKQMLDTRRSQ 704
+ LSK + E++++ MK +E + Q +VQQ VL KK WYKQ+L+ + S
Sbjct: 462 MEKLSKSYSDFESRLAQSMKRNEIRLTNIICQFNPLVQQVAVLKKKEFWYKQILEIKCSN 521
Query: 705 LRKAEAEESIKVSKMVDVLGNKVSTLLSLVQKIYVTLEHYSPVFQQYPGL 754
L+KAEAE VD+LG++V LLS++ KIY+ L+HYSPV + YPG+
Sbjct: 522 LQKAEAE--------VDILGDEVDALLSILGKIYIALDHYSPVLKHYPGV 563
>Os09g0133800 Conserved hypothetical protein
Length = 661
Score = 113 bits (282), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 127/503 (25%), Positives = 230/503 (45%), Gaps = 105/503 (20%)
Query: 326 LKGMNREEMIKYFRFEISKLKRLHELSLQEKTEELFKFKREK------GSLALKYDPEFE 379
LK M+R+E++ +F ++++KR H+ +LQEKTEE+F+ KRE L+ + EFE
Sbjct: 179 LKHMDRDELVAHFNKMMNQMKRQHDSTLQEKTEEIFRLKRENLKKEGPNPWHLRNNKEFE 238
Query: 380 PLRKKVPEIISRVDQIILNTINAPTAFSTNQVLEERGRLTGRIDSLYYANQNLRGLLAEK 439
+RKK+ E+I+++D++++ + T RI S + Q +K
Sbjct: 239 LMRKKIWEVITKLDEVLV-----------------ENKRTIRIKSDVFPGQQ------DK 275
Query: 440 MKDIKDLSRQVSDASR-----------KMSFQLSLEEKLSRQLHKIKGDYEDLHIQSTIR 488
+K + + Q+ A K S +E Q+ +++ D ED I + +R
Sbjct: 276 IKVVDSHNHQLQGAPTDNEEEECTTLIKASHFTPIETNYLNQIRRLESDIEDASIVTIVR 335
Query: 489 DEVYQTVTKRMFDDYRNSLQDPALTYQ---------EKVTSLEAALSEKETALRLANEEN 539
+E + + + + L + + +K EAA + L+ + E +
Sbjct: 336 EETEKILVTEFISEIKMGLHGYEMEFNMNLDFWSIIQKEAIAEAASNINSFLLKYSEENS 395
Query: 540 QRLKEKLSKQEKEHGIQNNQDYPELIKQDNEEMILRDIE---MEPHVS------------ 584
+ L QE + ++ N D L+ ++ EE L IE +E H+
Sbjct: 396 CAEAQSLHMQEMD-KLKLNVDTFNLVIREKEEY-LSQIEFKAIEDHLDFLRHELDSLRGK 453
Query: 585 -PRRSYAISEQNAEYEELI-KLKQTL------EIA-----------STALKEVESNELDY 625
++ IS++ +++ ++ +L+Q L EIA S + KEVE
Sbjct: 454 VAKQDSGISDKCRDFDVIVSRLEQALQHVHRNEIALKELNDRFRTVSDSQKEVEKQNKVL 513
Query: 626 NGILGKNEQ------EKQLEF------ILVSIMDLSKEFVQIENKMSGDMKGSEKGPEIL 673
+ I+ + E+ K+ EF ++ S+ K + ++ ++ +E +L
Sbjct: 514 HAIIKEKEKGFSSSISKEKEFTECMRCVVESMRGFEKLVTDQQTIIAHKVQHNESRFSLL 573
Query: 674 GYQCKHMVQQALVLTKKGLWYKQMLDTRRSQLRKAEAEESIKVSKMVDVLGNKVSTLLSL 733
QCK + ++ L KK L YK++ +TR S L+KAE E VD+LG++V L L
Sbjct: 574 KEQCKILAKEGNTLRKKALRYKEISETRASNLQKAELE--------VDLLGDEVEALTDL 625
Query: 734 VQKIYVTLEHYSPVFQQYPGLLD 756
+ KIY+ L+HYSPV Q Y G+++
Sbjct: 626 LAKIYIALDHYSPVLQYYTGVME 648
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.132 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 23,318,669
Number of extensions: 913292
Number of successful extensions: 3489
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 3476
Number of HSP's successfully gapped: 4
Length of query: 780
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 671
Effective length of database: 11,344,475
Effective search space: 7612142725
Effective search space used: 7612142725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 160 (66.2 bits)