BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0705000 Os06g0705000|J075046P19
         (267 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0705000  Conserved hypothetical protein                      399   e-111
Os04g0219000  Conserved hypothetical protein                      132   2e-31
Os05g0540000  Conserved hypothetical protein                       80   2e-15
Os03g0684500  Conserved hypothetical protein                       75   4e-14

>Os06g0705000 Conserved hypothetical protein
          Length = 267

 Score =  399 bits (1024), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 210/267 (78%), Positives = 210/267 (78%)

Query: 1   MMPKXXXXXXXXXXXDXXXXXXXXXXXXLPLRHPPHVAPGRXXXXXXXXXXXXXXXXXXX 60
           MMPK           D            LPLRHPPHVAPGR                   
Sbjct: 1   MMPKLLLLQAAAAVADRRWYGSGGRRGYLPLRHPPHVAPGRFTACLLAVAAVTTTFALAL 60

Query: 61  XXHRPDLSSAAAYAASPRXXXXXXXXXXXXXINTWKRYDLLRRSVAHYSGCGGVDAVHVV 120
             HRPDLSSAAAYAASPR             INTWKRYDLLRRSVAHYSGCGGVDAVHVV
Sbjct: 61  TLHRPDLSSAAAYAASPRGVGGGGGAGYAVVINTWKRYDLLRRSVAHYSGCGGVDAVHVV 120

Query: 121 WSEPEEPTEELRGSVLNCSDGGGAGVRFVINAEDSLNNRFRPIQGLTTDAVFSVDDDLIV 180
           WSEPEEPTEELRGSVLNCSDGGGAGVRFVINAEDSLNNRFRPIQGLTTDAVFSVDDDLIV
Sbjct: 121 WSEPEEPTEELRGSVLNCSDGGGAGVRFVINAEDSLNNRFRPIQGLTTDAVFSVDDDLIV 180

Query: 181 PCSTLRFAFAVWQSAPSAMVGFVPRMHWLADPGSNAKEYRYGSWWSVWWTGTYSMVLSKA 240
           PCSTLRFAFAVWQSAPSAMVGFVPRMHWLADPGSNAKEYRYGSWWSVWWTGTYSMVLSKA
Sbjct: 181 PCSTLRFAFAVWQSAPSAMVGFVPRMHWLADPGSNAKEYRYGSWWSVWWTGTYSMVLSKA 240

Query: 241 SFFHRQYLDLYTIRMLPSIRDYVNENR 267
           SFFHRQYLDLYTIRMLPSIRDYVNENR
Sbjct: 241 SFFHRQYLDLYTIRMLPSIRDYVNENR 267



>Os04g0219000 Conserved hypothetical protein
          Length = 145

 Score =  132 bits (333), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 67/76 (88%), Positives = 67/76 (88%), Gaps = 5/76 (6%)

Query: 137 NCSDGGGAGVRFVINAEDSLNNRFRPIQGLTTDAVFSVDDDLIVPCSTLRFAFAVWQSAP 196
           NCS      VRF INAEDSLNNRFRPIQGLTTDAVFSVDDDLIVPCSTLRFAFAVWQSA 
Sbjct: 68  NCS-----RVRFAINAEDSLNNRFRPIQGLTTDAVFSVDDDLIVPCSTLRFAFAVWQSAL 122

Query: 197 SAMVGFVPRMHWLADP 212
           SAMVGFVPRMHWL DP
Sbjct: 123 SAMVGFVPRMHWLTDP 138



>Os05g0540000 Conserved hypothetical protein
          Length = 744

 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 81/167 (48%), Gaps = 16/167 (9%)

Query: 101 LRRSVAHYSGCGGVDAVHVVWSEPEEPTEELRGSVLNCSDGGGAGVRFVINAEDSLNNRF 160
           L+  V HYS C  V  + VVW++   PT +   S +         VR  +   +SLNNRF
Sbjct: 513 LKLFVEHYSRCESVREIVVVWNKGNHPTSDAFDSTVP--------VRIRVEEINSLNNRF 564

Query: 161 RPIQGLTTDAVFSVDDDLIVPCSTLRFAFAVWQSAPSAMVGFVPRMHWLADPGSNAKEYR 220
           R    + T AV  +DDD+++ CS +   F VW+  P  MVGF PRM    DP     E R
Sbjct: 565 RGDPLIKTRAVLELDDDIMMTCSDVEKGFKVWREHPERMVGFYPRM-IDGDPLQYRNE-R 622

Query: 221 YGSWWSVWWTGTYSMVLSKASFFHRQY-LDLYTIRMLPSIRDYVNEN 266
           Y           Y+++L+ A+F   ++    Y  +     RDYV++N
Sbjct: 623 YAR-----GKKGYNLILTGAAFMDSEFAFSKYWSQEAKEGRDYVHKN 664



>Os03g0684500 Conserved hypothetical protein
          Length = 666

 Score = 75.5 bits (184), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 68/143 (47%), Gaps = 15/143 (10%)

Query: 101 LRRSVAHYSGCGGVDAVHVVWSEPEEPTEELRGSVLNCSDGGGAGVRFVINAEDSLNNRF 160
           L+  V HYS C  V  + VVW++ + P +    SV+         VR  +   +SLNNRF
Sbjct: 510 LKMFVEHYSNCASVRDIVVVWNKGQPPAQGELKSVVP--------VRIRVEDRNSLNNRF 561

Query: 161 RPIQGLTTDAVFSVDDDLIVPCSTLRFAFAVWQSAPSAMVGFVPRMHWLADPGSNAKEYR 220
                + T AV  +DDD+++ C  L   F VW+  P  ++G+ PR+       S      
Sbjct: 562 NIDSEIKTKAVMELDDDIMMTCDDLERGFKVWREHPDRIIGYYPRL-------SEGSPLE 614

Query: 221 YGSWWSVWWTGTYSMVLSKASFF 243
           Y +       G Y+MVL+ A+F 
Sbjct: 615 YRNERYARQQGGYNMVLTGAAFM 637



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.135    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,658,476
Number of extensions: 363215
Number of successful extensions: 697
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 695
Number of HSP's successfully gapped: 4
Length of query: 267
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 168
Effective length of database: 11,866,615
Effective search space: 1993591320
Effective search space used: 1993591320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 155 (64.3 bits)