Os04g0219000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0219000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.03 | 0.37 | 7.99 | 0.452 | 0.717 | -0.99 | -0.622 | -1.34 | 0.21 | 8.3 | 25.71 | 3 | -- | -- |
| 65.01 | 0.378 | 8.01 | 0.239 | 0.719 | -0.908 | -0.38 | -- | 0.165 | 8.33 | 25.71 | 3 | -- | -- |
| 63.08 | 0.373 | 7.99 | 0.407 | 0.717 | -0.979 | -- | -1.15 | 0.204 | 8.32 | 25.73 | 2 | -- | -- |
| 65.43 | 0.379 | 8.01 | 0.23 | 0.72 | -0.898 | -- | -- | 0.167 | 8.4 | 25.8 | 2 | -- | -- |
| 90.81 | 0.446 | 8.01 | 0.375 | -- | -1.17 | -- | -1.24 | 0.191 | -- | 25.08 | 2 | -- | -- |
| 77.45 | 0.413 | 7.97 | 0.446 | 0.79 | -- | -0.234 | -- | 0.359 | 9.37 | -- | -- | -- | -- |
| 77.64 | 0.413 | 7.97 | 0.438 | 0.79 | -- | -- | -- | 0.358 | 9.42 | -- | -- | -- | -- |
| 93.58 | 0.453 | 8.04 | 0.19 | -- | -1.08 | -- | -- | 0.151 | -- | 25.08 | 2 | -- | -- |
| 66.7 | 0.382 | 8.02 | -- | 0.718 | -0.984 | -- | -- | 0.125 | 8.25 | 25.88 | 2 | -- | -- |
| 114.22 | 0.499 | 7.99 | 0.433 | -- | -- | -- | -- | 0.361 | -- | -- | -- | -- | -- |
| 82.7 | 0.425 | 7.98 | -- | 0.79 | -- | -- | -- | 0.31 | 9.38 | -- | -- | -- | -- |
| 94.46 | 0.454 | 8.04 | -- | -- | -1.14 | -- | -- | 0.119 | -- | 25.12 | 2 | -- | -- |
| 119.17 | 0.51 | 8 | -- | -- | -- | -- | -- | 0.313 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 61.78 | temperature | 25 | 10 | < th | dose dependent | rect. | 10 | 20 |
| 5 | 61.91 | temperature | 25 | 10 | < th | dose dependent | rect. | 8 | 22 |
| 16 | 62.12 | temperature | 25 | 270 | < th | dose dependent | rect. | 10 | 18 |
| 37 | 62.49 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 48 | 62.62 | temperature | 25 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 49 | 62.66 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 50 | 62.66 | temperature | 25 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 51 | 62.67 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 53 | 62.70 | temperature | 25 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 56 | 62.71 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 57 | 62.72 | temperature | 25 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 67 | 62.78 | temperature | 20 | 1440 | > th | dose dependent | rect. | 2 | 4 |
| 70 | 62.78 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 74 | 62.80 | temperature | 25 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 154 | 63.32 | temperature | 25 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 171 | 63.43 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 197 | 63.54 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 300 | 64.04 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 1 |
| 301 | 64.05 | temperature | 20 | 4320 | > th | dose independent | rect. | 3 | 1 |
| 307 | 64.09 | temperature | 25 | 270 | < th | dose dependent | sin | 14 | NA |
| 329 | 64.21 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 368 | 64.43 | temperature | 25 | 10 | < th | dose dependent | sin | 11 | NA |
| 395 | 64.52 | wind | 1 | 14400 | > th | dose independent | rect. | 8 | 4 |
| 410 | 64.57 | wind | 3 | 14400 | < th | dose dependent | rect. | 6 | 7 |
| 415 | 64.60 | temperature | 25 | 720 | < th | dose dependent | rect. | 10 | 13 |
| 435 | 64.66 | wind | 1 | 14400 | < th | dose independent | rect. | 8 | 4 |
| 491 | 64.84 | temperature | 25 | 720 | < th | dose dependent | sin | 19 | NA |
| 498 | 64.88 | wind | 1 | 14400 | < th | dose dependent | rect. | 8 | 4 |
| 504 | 64.90 | wind | 3 | 43200 | < th | dose dependent | rect. | 23 | 3 |
| 515 | 64.93 | wind | 3 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 538 | 64.98 | wind | 3 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 541 | 64.99 | wind | 1 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 544 | 65.00 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 8 |
| 570 | 65.06 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 9 |
| 583 | 65.08 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 613 | 65.14 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 7 |
| 646 | 65.23 | wind | 3 | 14400 | < th | dose dependent | rect. | 6 | 3 |
| 663 | 65.26 | wind | 3 | 14400 | < th | dose dependent | rect. | 20 | 20 |
| 675 | 65.29 | wind | 3 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 676 | 65.29 | temperature | 30 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 695 | 65.32 | wind | 9 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 697 | 65.32 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 699 | 65.32 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 5 |
| 734 | 65.36 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 3 |
| 736 | 65.37 | wind | 1 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 752 | 65.40 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 3 |
| 838 | 65.50 | wind | 3 | 14400 | < th | dose dependent | sin | 3 | NA |
| 863 | 65.53 | humidity | 90 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 950 | 65.62 | temperature | 20 | 4320 | > th | dose independent | sin | 12 | NA |
| 951 | 65.62 | temperature | 20 | 4320 | < th | dose independent | sin | 12 | NA |