Os05g0540000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0540000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 70.24 | 0.394 | 10.9 | 0.789 | 1.01 | -0.595 | 0.368 | 1.42 | 0.482 | 21.1 | 10.72 | 1331 | -- | -- |
| 73.95 | 0.401 | 10.9 | 0.632 | 0.986 | -0.534 | 0.449 | -- | 0.443 | 20.9 | 10.68 | 1375 | -- | -- |
| 69.79 | 0.389 | 10.9 | 0.791 | 1.1 | -0.643 | -- | 1.74 | 0.456 | 21.2 | 10.72 | 1225 | -- | -- |
| 74.72 | 0.403 | 10.9 | 0.532 | 0.952 | -0.448 | -- | -- | 0.409 | 21 | 16.74 | 1361 | -- | -- |
| 111.9 | 0.495 | 10.9 | 0.426 | -- | -0.446 | -- | 0.107 | 0.222 | -- | 10.72 | 1225 | -- | -- |
| 82.03 | 0.425 | 11 | 0.419 | 0.925 | -- | 0.522 | -- | 0.241 | 20.9 | -- | -- | -- | -- |
| 82.95 | 0.427 | 11 | 0.401 | 0.922 | -- | -- | -- | 0.241 | 20.9 | -- | -- | -- | -- |
| 99.63 | 0.467 | 10.9 | 0.388 | -- | -0.534 | -- | -- | 0.265 | -- | 2.57 | 1560 | -- | -- |
| 80.19 | 0.417 | 10.9 | -- | 1.04 | -0.454 | -- | -- | 0.338 | 21 | 19.5 | 1330 | -- | -- |
| 131.66 | 0.536 | 10.9 | 0.401 | -- | -- | -- | -- | 0.235 | -- | -- | -- | -- | -- |
| 87.18 | 0.437 | 11 | -- | 0.922 | -- | -- | -- | 0.196 | 21 | -- | -- | -- | -- |
| 103.6 | 0.476 | 10.9 | -- | -- | -0.536 | -- | -- | 0.222 | -- | 2.57 | 1560 | -- | -- |
| 135.9 | 0.544 | 10.9 | -- | -- | -- | -- | -- | 0.19 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 65.86 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 2 | 66.37 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 3 | 66.88 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 4 | 66.88 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 3 |
| 5 | 67.12 | radiation | 10 | 720 | < th | dose independent | rect. | 14 | 3 |
| 6 | 67.15 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 7 | 67.15 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 8 | 67.18 | radiation | 10 | 720 | < th | dose dependent | rect. | 11 | 7 |
| 9 | 67.19 | radiation | 10 | 720 | < th | dose dependent | rect. | 13 | 5 |
| 26 | 68.13 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 29 | 68.26 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 33 | 68.32 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 6 |
| 48 | 68.72 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 12 |
| 54 | 68.74 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 18 |
| 82 | 68.98 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 16 |
| 105 | 69.23 | radiation | 10 | 1440 | < th | dose dependent | sin | 20 | NA |
| 118 | 69.27 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 161 | 69.38 | humidity | 80 | 1440 | < th | dose independent | rect. | 24 | 15 |
| 183 | 69.50 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 197 | 69.55 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 211 | 69.65 | radiation | 10 | 720 | > th | dose independent | rect. | 11 | 7 |
| 238 | 69.72 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 241 | 69.73 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 255 | 69.79 | humidity | 80 | 1440 | > th | dose independent | rect. | 24 | 16 |
| 299 | 69.97 | humidity | 80 | 720 | > th | dose independent | rect. | 11 | 16 |
| 337 | 70.17 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 9 |
| 346 | 70.18 | humidity | 60 | 720 | > th | dose dependent | rect. | 12 | 15 |
| 353 | 70.20 | humidity | 80 | 720 | > th | dose independent | rect. | 9 | 18 |
| 361 | 70.23 | humidity | 80 | 720 | > th | dose independent | rect. | 11 | 11 |
| 375 | 70.24 | humidity | 60 | 720 | > th | dose dependent | sin | 16 | NA |
| 378 | 70.25 | humidity | 80 | 1440 | < th | dose independent | sin | 3 | NA |
| 395 | 70.30 | radiation | 10 | 720 | > th | dose independent | sin | 17 | NA |
| 401 | 70.31 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 499 | 70.49 | humidity | 80 | 720 | > th | dose independent | sin | 19 | NA |
| 509 | 70.51 | radiation | 10 | 1440 | > th | dose independent | sin | 23 | NA |
| 510 | 70.51 | humidity | 80 | 720 | > th | dose independent | rect. | 9 | 13 |
| 518 | 70.52 | humidity | 80 | 720 | > th | dose independent | rect. | 11 | 20 |
| 580 | 70.67 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 582 | 70.67 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 631 | 70.71 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 634 | 70.71 | humidity | 80 | 720 | > th | dose independent | rect. | 9 | 22 |
| 639 | 70.72 | humidity | 80 | 1440 | > th | dose independent | sin | 3 | NA |
| 646 | 70.72 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 17 |
| 661 | 70.74 | humidity | 60 | 720 | > th | dose dependent | rect. | 14 | 10 |
| 663 | 70.75 | humidity | 70 | 720 | > th | dose independent | rect. | 13 | 20 |
| 692 | 70.77 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 738 | 70.82 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 767 | 70.86 | humidity | 80 | 720 | > th | dose independent | rect. | 6 | 22 |
| 780 | 70.88 | humidity | 70 | 720 | < th | dose independent | rect. | 13 | 19 |
| 829 | 70.94 | humidity | 70 | 720 | < th | dose independent | sin | 15 | NA |
| 830 | 70.94 | humidity | 70 | 720 | < th | dose independent | rect. | 13 | 7 |
| 843 | 70.94 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 869 | 70.97 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |
| 944 | 70.98 | humidity | 70 | 720 | > th | dose independent | rect. | 12 | 8 |
| 976 | 71.02 | humidity | 80 | 720 | < th | dose dependent | sin | 12 | NA |