BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0540000 Os05g0540000|AK100416
(744 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0540000 Conserved hypothetical protein 1516 0.0
Os03g0684500 Conserved hypothetical protein 664 0.0
Os06g0705000 Conserved hypothetical protein 80 6e-15
>Os05g0540000 Conserved hypothetical protein
Length = 744
Score = 1516 bits (3926), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 730/744 (98%), Positives = 730/744 (98%)
Query: 1 MAGRRAMRPSGSSMRGVVARLAAARSPAVSFXXXXXXXXXXXXXXYFWLVVSSFRLPDSR 60
MAGRRAMRPSGSSMRGVVARLAAARSPAVSF YFWLVVSSFRLPDSR
Sbjct: 1 MAGRRAMRPSGSSMRGVVARLAAARSPAVSFLVAAAAGAALVGGVYFWLVVSSFRLPDSR 60
Query: 61 AVGCLPDGEGSWAIGMYYGKSPLELRPIELEGRSNGNSSAWPVANPVLTCATPTEGGYPS 120
AVGCLPDGEGSWAIGMYYGKSPLELRPIELEGRSNGNSSAWPVANPVLTCATPTEGGYPS
Sbjct: 61 AVGCLPDGEGSWAIGMYYGKSPLELRPIELEGRSNGNSSAWPVANPVLTCATPTEGGYPS 120
Query: 121 NFVADPFLYVQGDTLFLFFETKTVSTMQGDIGVARSLDQGATWEFLGIALDEAWHLSYPF 180
NFVADPFLYVQGDTLFLFFETKTVSTMQGDIGVARSLDQGATWEFLGIALDEAWHLSYPF
Sbjct: 121 NFVADPFLYVQGDTLFLFFETKTVSTMQGDIGVARSLDQGATWEFLGIALDEAWHLSYPF 180
Query: 181 VFKYENEIYMMPEGNKKKELRLYRATKFPLEWTLEKVLIDKPLIDSSLVQYDGLWWLFAS 240
VFKYENEIYMMPEGNKKKELRLYRATKFPLEWTLEKVLIDKPLIDSSLVQYDGLWWLFAS
Sbjct: 181 VFKYENEIYMMPEGNKKKELRLYRATKFPLEWTLEKVLIDKPLIDSSLVQYDGLWWLFAS 240
Query: 241 DFTRHGIEKNAELEIWYSNSPLGPWSEHKQNPIYRSDKSLGARNGGRLFIFEGSLYRPGQ 300
DFTRHGIEKNAELEIWYSNSPLGPWSEHKQNPIYRSDKSLGARNGGRLFIFEGSLYRPGQ
Sbjct: 241 DFTRHGIEKNAELEIWYSNSPLGPWSEHKQNPIYRSDKSLGARNGGRLFIFEGSLYRPGQ 300
Query: 301 DCSGTYGRKVKLYKIEKLTKEEYKEVPVNLGIEEAKKGRNAWNGMRYHHIDAQQLASGGW 360
DCSGTYGRKVKLYKIEKLTKEEYKEVPVNLGIEEAKKGRNAWNGMRYHHIDAQQLASGGW
Sbjct: 301 DCSGTYGRKVKLYKIEKLTKEEYKEVPVNLGIEEAKKGRNAWNGMRYHHIDAQQLASGGW 360
Query: 361 VAVMDGDRVPSGDSTRRSLFGYMGFLVAVALVTFVGFVKGAISCYIPPSFWVPLTRRSEL 420
VAVMDGDRVPSGDSTRRSLFGYMGFLVAVALVTFVGFVKGAISCYIPPSFWVPLTRRSEL
Sbjct: 361 VAVMDGDRVPSGDSTRRSLFGYMGFLVAVALVTFVGFVKGAISCYIPPSFWVPLTRRSEL 420
Query: 421 SRILPVHRFNLKIRRYSTSIGRNISATKARLSEKTWSNTLFFCVIALIGIVNVCIAVHFL 480
SRILPVHRFNLKIRRYSTSIGRNISATKARLSEKTWSNTLFFCVIALIGIVNVCIAVHFL
Sbjct: 421 SRILPVHRFNLKIRRYSTSIGRNISATKARLSEKTWSNTLFFCVIALIGIVNVCIAVHFL 480
Query: 481 LGGNGAEEAYTHQGQHSQFTMVTMTYEARLWNLKLFVEHYSRCESVREIVVVWNKGNHPT 540
LGGNGAEEAYTHQGQHSQFTMVTMTYEARLWNLKLFVEHYSRCESVREIVVVWNKGNHPT
Sbjct: 481 LGGNGAEEAYTHQGQHSQFTMVTMTYEARLWNLKLFVEHYSRCESVREIVVVWNKGNHPT 540
Query: 541 SDAFDSTVPVRIRVEEINSLNNRFRGDPLIKTRAVLELDDDIMMTCSDVEKGFKVWREHP 600
SDAFDSTVPVRIRVEEINSLNNRFRGDPLIKTRAVLELDDDIMMTCSDVEKGFKVWREHP
Sbjct: 541 SDAFDSTVPVRIRVEEINSLNNRFRGDPLIKTRAVLELDDDIMMTCSDVEKGFKVWREHP 600
Query: 601 ERMVGFYPRMIDGDPLQYRNERYARGKKGYNLILTGAAFMDSEFAFSKYWSQEAKEGRDY 660
ERMVGFYPRMIDGDPLQYRNERYARGKKGYNLILTGAAFMDSEFAFSKYWSQEAKEGRDY
Sbjct: 601 ERMVGFYPRMIDGDPLQYRNERYARGKKGYNLILTGAAFMDSEFAFSKYWSQEAKEGRDY 660
Query: 661 VHKNFNCEDLLMNFLYANASSSRTVEYVHPAWAIDTSKLSSVAISRDTQKHYDIRTKCLA 720
VHKNFNCEDLLMNFLYANASSSRTVEYVHPAWAIDTSKLSSVAISRDTQKHYDIRTKCLA
Sbjct: 661 VHKNFNCEDLLMNFLYANASSSRTVEYVHPAWAIDTSKLSSVAISRDTQKHYDIRTKCLA 720
Query: 721 KFASIYGPLPQKWLFGMREDGWDK 744
KFASIYGPLPQKWLFGMREDGWDK
Sbjct: 721 KFASIYGPLPQKWLFGMREDGWDK 744
>Os03g0684500 Conserved hypothetical protein
Length = 666
Score = 664 bits (1712), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/609 (53%), Positives = 427/609 (70%), Gaps = 6/609 (0%)
Query: 64 CLPDGEGSWAIGMYYGKSPLELRPIELEGRSNGNSSAWPVANPVLTCATPTEGGYPSNFV 123
C PD EGSW+ G++ G SP L PIE G S + +AWPVANPV+TCA + G+PS+FV
Sbjct: 59 CRPDAEGSWSAGVFLGDSPFSLEPIEHWGISKADGAAWPVANPVVTCAEVEDAGFPSSFV 118
Query: 124 ADPFLYVQGDTLFLFFETKTVSTMQGDIGVARSLDQGATWEFLGIALDEAWHLSYPFVFK 183
A PFL++QGD +++FFETK T QGDI A S D G TW+ LG+ LDE WHLSYP+VF
Sbjct: 119 AKPFLFLQGDAIYMFFETKNPITSQGDIAAAVSEDAGVTWQQLGVVLDEEWHLSYPYVFT 178
Query: 184 YENEIYMMPEGNKKKELRLYRATKFPLEWTLEKVLIDKPLIDSSLVQYDGLWWLFASDFT 243
Y+N++YMMPE +K ++RLYRA FPL+W LEKVL++KPL+DS ++ + G +WL +D +
Sbjct: 179 YKNKVYMMPESSKNGDIRLYRALDFPLKWELEKVLLEKPLVDSVIINFQGSYWLLGTDLS 238
Query: 244 RHGIEKNAELEIWYSNSPLGPWSEHKQNPIYRSDKSLGARNGGRLFIFEGSLYRPGQDCS 303
+G ++N E+ IWYSNSPL PW HKQN I+ + K L RNGGR FI+ G+LYR G+
Sbjct: 239 SYGAKRNREISIWYSNSPLSPWIPHKQNLIHNTGKMLSTRNGGRPFIYNGNLYRVGKGQG 298
Query: 304 GTYGRKVKLYKIEKLTKEEYKEVPVNLGIEEAKKGRNAWNGMRYHHIDAQQLASGG-WVA 362
G G ++++K+E L EYKEV V I + KGRNAWNG R HH+D QQL SG W+
Sbjct: 299 GGSGHGIQVFKVEILKSNEYKEVEVPFVINKQLKGRNAWNGARSHHLDVQQLPSGKPWIG 358
Query: 363 VMDGDRVPSGDSTRRSLFGYMGFLVAVALVTFVGFVKGAISCYIPPSFWVPLT-RRSELS 421
VMDGDRVPSGDS R GYM + V + LV G + G I+C +P + +P T +RS L
Sbjct: 359 VMDGDRVPSGDSVHRLTIGYMIYGVVLILVLVTGGLIGTINCSLPLRWSLPHTEKRSGLF 418
Query: 422 RILPVHRFNL--KIRRYSTSIGRNISATKARLSEKTWSNTLFFCVIALIGIVNVCIAVHF 479
+ RF L K+ +++ + S R++ +T ++ V+ LI +V C+ H+
Sbjct: 419 NV--EQRFFLYHKLSSLISNLNKLGSLICGRINYRTCKGRVYVVVVMLILVVLTCVGTHY 476
Query: 480 LLGGNGAEEAYTHQGQHSQFTMVTMTYEARLWNLKLFVEHYSRCESVREIVVVWNKGNHP 539
+ GGNGAEE Y +G++SQFT++TMTY+ARLWNLK+FVEHYS C SVR+IVVVWNKG P
Sbjct: 477 IYGGNGAEEPYPIKGKYSQFTLLTMTYDARLWNLKMFVEHYSNCASVRDIVVVWNKGQPP 536
Query: 540 TSDAFDSTVPVRIRVEEINSLNNRFRGDPLIKTRAVLELDDDIMMTCSDVEKGFKVWREH 599
S VPVRIRVE+ NSLNNRF D IKT+AV+ELDDDIMMTC D+E+GFKVWREH
Sbjct: 537 AQGELKSVVPVRIRVEDRNSLNNRFNIDSEIKTKAVMELDDDIMMTCDDLERGFKVWREH 596
Query: 600 PERMVGFYPRMIDGDPLQYRNERYARGKKGYNLILTGAAFMDSEFAFSKYWSQEAKEGRD 659
P+R++G+YPR+ +G PL+YRNERYAR + GYN++LTGAAFMD AF KYWS+EA+
Sbjct: 597 PDRIIGYYPRLSEGSPLEYRNERYARQQGGYNMVLTGAAFMDHGLAFKKYWSKEAEVNHH 656
Query: 660 YVHKNFNCE 668
+ K E
Sbjct: 657 LLLKQVQYE 665
>Os06g0705000 Conserved hypothetical protein
Length = 267
Score = 80.1 bits (196), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 513 LKLFVEHYSRCESVREIVVVWNKGNHPTSDAFDSTVP--------VRIRVEEINSLNNRF 564
L+ V HYS C V + VVW++ PT + S + VR + +SLNNRF
Sbjct: 101 LRRSVAHYSGCGGVDAVHVVWSEPEEPTEELRGSVLNCSDGGGAGVRFVINAEDSLNNRF 160
Query: 565 RGDPLIKTRAVLELDDDIMMTCSDVEKGFKVWREHPERMVGFYPRM-IDGDPLQYRNE-R 622
R + T AV +DDD+++ CS + F VW+ P MVGF PRM DP E R
Sbjct: 161 RPIQGLTTDAVFSVDDDLIVPCSTLRFAFAVWQSAPSAMVGFVPRMHWLADPGSNAKEYR 220
Query: 623 YAR-----GKKGYNLILTGAAFMDSEFAFSKYWSQEAKEGRDYVHKN 664
Y Y+++L+ A+F ++ Y + RDYV++N
Sbjct: 221 YGSWWSVWWTGTYSMVLSKASFFHRQY-LDLYTIRMLPSIRDYVNEN 266
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.137 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 26,918,353
Number of extensions: 1182394
Number of successful extensions: 2272
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 2266
Number of HSP's successfully gapped: 4
Length of query: 744
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 636
Effective length of database: 11,396,689
Effective search space: 7248294204
Effective search space used: 7248294204
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 160 (66.2 bits)