BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0694500 Os06g0694500|AK067484
(219 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0694500 Similar to Nitrogen fixation like protein 394 e-110
Os11g0181500 Similar to Nitrogen fixation like protein 246 1e-65
Os12g0176200 Similar to Nitrogen fixation like protein 211 2e-55
Os03g0314700 Nitrogen-fixing NifU, C-terminal domain contai... 103 1e-22
Os05g0155300 Similar to HIRA interacting protein 5 66 1e-11
>Os06g0694500 Similar to Nitrogen fixation like protein
Length = 219
Score = 394 bits (1012), Expect = e-110, Method: Compositional matrix adjust.
Identities = 199/219 (90%), Positives = 199/219 (90%)
Query: 1 MRPFSPHLRQXXXXXXXXXXXXXXXXXXXXKNSSAPLIHGRLSFSHTSLQSPNNRGKRTG 60
MRPFSPHLRQ KNSSAPLIHGRLSFSHTSLQSPNNRGKRTG
Sbjct: 1 MRPFSPHLRQAAAAAAAAATGAPPLAAALLKNSSAPLIHGRLSFSHTSLQSPNNRGKRTG 60
Query: 61 WAVRVLPLTEENVEMVLDQVRPSLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLK 120
WAVRVLPLTEENVEMVLDQVRPSLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLK
Sbjct: 61 WAVRVLPLTEENVEMVLDQVRPSLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLK 120
Query: 121 MGIETRLRDKIPEILAVEQIVDTETGLELNHDNVDKVLDEIRPYLSGTGGGSLDLVQIDE 180
MGIETRLRDKIPEILAVEQIVDTETGLELNHDNVDKVLDEIRPYLSGTGGGSLDLVQIDE
Sbjct: 121 MGIETRLRDKIPEILAVEQIVDTETGLELNHDNVDKVLDEIRPYLSGTGGGSLDLVQIDE 180
Query: 181 SVVKVRLTGPAAGVMTVRVAVTQKLREKIPSILAVQLTE 219
SVVKVRLTGPAAGVMTVRVAVTQKLREKIPSILAVQLTE
Sbjct: 181 SVVKVRLTGPAAGVMTVRVAVTQKLREKIPSILAVQLTE 219
>Os11g0181500 Similar to Nitrogen fixation like protein
Length = 228
Score = 246 bits (628), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 121/152 (79%), Positives = 134/152 (88%)
Query: 66 LPLTEENVEMVLDQVRPSLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIET 125
LPLT ENVE+VLD+VRP LMADGGNVALHEIDG VV LKLQGACGSCP+S T+KMGIE
Sbjct: 75 LPLTAENVEIVLDEVRPYLMADGGNVALHEIDGNVVRLKLQGACGSCPASVTTMKMGIER 134
Query: 126 RLRDKIPEILAVEQIVDTETGLELNHDNVDKVLDEIRPYLSGTGGGSLDLVQIDESVVKV 185
RL +KIPEI+AVE I D ETGLELN +N++KVLDEIRPYLSGTGGG L+ V I+E +VKV
Sbjct: 135 RLMEKIPEIVAVEPIADEETGLELNQENIEKVLDEIRPYLSGTGGGELEFVAIEEPIVKV 194
Query: 186 RLTGPAAGVMTVRVAVTQKLREKIPSILAVQL 217
RLTGPAAGVMTVRVA+TQKLREKIP I AVQL
Sbjct: 195 RLTGPAAGVMTVRVALTQKLREKIPKIAAVQL 226
>Os12g0176200 Similar to Nitrogen fixation like protein
Length = 226
Score = 211 bits (538), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 108/152 (71%), Positives = 124/152 (81%)
Query: 66 LPLTEENVEMVLDQVRPSLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIET 125
LPLT NVE VLDQVRP L ADGG+VALHEI G VV LKLQGACGSCPSS +T+K GIE
Sbjct: 73 LPLTAGNVESVLDQVRPYLTADGGDVALHEIAGNVVRLKLQGACGSCPSSLITIKRGIER 132
Query: 126 RLRDKIPEILAVEQIVDTETGLELNHDNVDKVLDEIRPYLSGTGGGSLDLVQIDESVVKV 185
RL +KIP++ AVE + D ETGLELN +NV+KVL+EIRPYL+GTGGG L + I +VKV
Sbjct: 133 RLMEKIPDVAAVEPVTDKETGLELNEENVEKVLNEIRPYLAGTGGGGLQFLMIKGPIVKV 192
Query: 186 RLTGPAAGVMTVRVAVTQKLREKIPSILAVQL 217
RLTGPAA V TVR+AV++KLREKIPSI VQL
Sbjct: 193 RLTGPAAVVRTVRIAVSKKLREKIPSIQIVQL 224
>Os03g0314700 Nitrogen-fixing NifU, C-terminal domain containing protein
Length = 224
Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 92/157 (58%), Gaps = 7/157 (4%)
Query: 61 WAVRVLPLTEENVEMVLDQVRPSLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLK 120
++ LT ENV+ VLD VRP L+ADGG+V + ++ V+ LKL+GACGSCPSST T+K
Sbjct: 69 YSAETYELTAENVDRVLDDVRPYLIADGGDVTVASVEDGVISLKLEGACGSCPSSTTTMK 128
Query: 121 MGIETRLRDKIPEILA-VEQIVDTETG-LELNHDNVDKVLDEIRPYLSGTGGGSLDLVQI 178
MGIE L++K + + + Q+ D + E V+ LD +RP ++ GGS+++V +
Sbjct: 129 MGIERVLKEKFGDAVKDIRQVFDDDQQPAEPTPQAVNGHLDILRPAIANY-GGSVEVVAV 187
Query: 179 DESVVKVRLTGPAAGVMTVRVAVTQKLREKIPSILAV 215
D VR GP ++ + ++EK P I V
Sbjct: 188 DGEDCLVRYEGPE----SIGSGIKAAIKEKFPDITNV 220
>Os05g0155300 Similar to HIRA interacting protein 5
Length = 272
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 74 EMVLDQVRPSLMADGGNVALHEIDGL--VVVLKLQGACGSCPSSTMTLKMGIETRLRDKI 131
E++ ++RP++ DGG++ D +V LK+QGAC CPSS++TLK GIE L +
Sbjct: 190 ELLETRIRPAVQDDGGDIEYRGFDPETGIVKLKMQGACSGCPSSSVTLKSGIENMLMHYV 249
Query: 132 PEILAVEQIVDTETGLELN 150
PE+ VEQ +D + EL
Sbjct: 250 PEVKGVEQELDGDEEAELT 268
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.134 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,643,018
Number of extensions: 254209
Number of successful extensions: 695
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 680
Number of HSP's successfully gapped: 5
Length of query: 219
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 122
Effective length of database: 11,971,043
Effective search space: 1460467246
Effective search space used: 1460467246
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 154 (63.9 bits)