Os03g0314700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nitrogen-fixing NifU, C-terminal domain containing protein.
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Os03g0314700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Nitrogen-fixing NifU, C-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 59.88 | 0.364 | 10.8 | 0.566 | 1.53 | 1.39 | 0.92 | -3.57 | -0.0671 | 11.6 | 25.7 | 12 | -- | -- |
| 64 | 0.375 | 10.7 | 0.942 | 1.55 | 1.08 | 0.605 | -- | 0.00518 | 11.6 | 25.2 | 19 | -- | -- |
| 63.19 | 0.37 | 10.8 | 0.678 | 1.52 | 1.38 | -- | -2.73 | -0.0437 | 11.5 | 25.7 | 13 | -- | -- |
| 65.28 | 0.376 | 10.7 | 0.964 | 1.55 | 1.1 | -- | -- | 0.000262 | 11.6 | 25.2 | 12 | -- | -- |
| 180.66 | 0.629 | 10.8 | 0.373 | -- | 2.41 | -- | -3.37 | -0.252 | -- | 24.5 | 6 | -- | -- |
| 81.68 | 0.424 | 10.7 | 1.1 | 1.85 | -- | 0.764 | -- | 0.082 | 12.2 | -- | -- | -- | -- |
| 84.2 | 0.43 | 10.7 | 1.13 | 1.84 | -- | -- | -- | 0.0857 | 12.2 | -- | -- | -- | -- |
| 186.34 | 0.639 | 10.8 | 0.773 | -- | 2.16 | -- | -- | -0.143 | -- | 24.45 | 6 | -- | -- |
| 88.43 | 0.438 | 10.8 | -- | 1.48 | 1.36 | -- | -- | -0.125 | 11.3 | 25.09 | 13 | -- | -- |
| 298.1 | 0.807 | 10.8 | 1.07 | -- | -- | -- | -- | 0.0575 | -- | -- | -- | -- | -- |
| 117.67 | 0.507 | 10.7 | -- | 1.83 | -- | -- | -- | -0.0398 | 12.2 | -- | -- | -- | -- |
| 201.7 | 0.664 | 10.8 | -- | -- | 2.26 | -- | -- | -0.262 | -- | 24.16 | 7 | -- | -- |
| 328.1 | 0.845 | 10.8 | -- | -- | -- | -- | -- | -0.0608 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 55.66 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 11 |
| 2 | 55.81 | temperature | 25 | 30 | > th | dose dependent | rect. | 5 | 13 |
| 3 | 55.85 | temperature | 25 | 30 | > th | dose dependent | rect. | 1 | 17 |
| 21 | 56.31 | temperature | 25 | 30 | > th | dose dependent | rect. | 23 | 19 |
| 48 | 57.32 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 12 |
| 55 | 57.51 | temperature | 25 | 30 | > th | dose dependent | sin | 0 | NA |
| 71 | 57.74 | temperature | 15 | 720 | > th | dose dependent | rect. | 4 | 3 |
| 94 | 58.08 | temperature | 25 | 270 | > th | dose dependent | sin | 4 | NA |
| 206 | 59.65 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 8 |
| 228 | 59.96 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 3 |
| 253 | 60.08 | temperature | 25 | 10 | > th | dose dependent | rect. | 5 | 19 |
| 256 | 60.15 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 274 | 60.30 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 10 |
| 290 | 60.36 | temperature | 25 | 270 | > th | dose independent | rect. | 5 | 10 |
| 297 | 60.40 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 1 |
| 332 | 60.57 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 378 | 60.83 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 689 | 62.83 | temperature | 25 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 786 | 63.36 | temperature | 25 | 270 | > th | dose independent | sin | 2 | NA |
| 837 | 63.64 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 3 |
| 840 | 63.66 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 849 | 63.79 | temperature | 30 | 270 | < th | dose dependent | sin | 1 | NA |
| 875 | 64.05 | temperature | 25 | 270 | < th | dose independent | sin | 1 | NA |
| 893 | 64.19 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 12 |
| 968 | 64.64 | temperature | 10 | 10 | > th | dose dependent | sin | 23 | NA |