BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0314700 Os03g0314700|AK069184
(224 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G01940.1 | chr4:842265-843388 REVERSE LENGTH=232 241 2e-64
AT4G25910.1 | chr4:13164128-13165094 FORWARD LENGTH=237 106 8e-24
AT5G49940.1 | chr5:20315464-20317228 FORWARD LENGTH=236 104 5e-23
AT1G51390.1 | chr1:19050427-19051753 FORWARD LENGTH=276 57 6e-09
AT3G20970.1 | chr3:7348277-7350069 FORWARD LENGTH=284 56 2e-08
>AT4G01940.1 | chr4:842265-843388 REVERSE LENGTH=232
Length = 231
Score = 241 bits (615), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 114/155 (73%), Positives = 138/155 (89%), Gaps = 2/155 (1%)
Query: 68 LYSAETYELTAENVDRVLDDVRPYLIADGGDVTVASVEDGVISLKLEGACGSCPSSTTTM 127
LYSA+T++LT +NVD VL+DVRP+LI+DGG+V V SVEDGV+SLKL+GAC SCPSS+TTM
Sbjct: 77 LYSAQTFDLTPQNVDLVLEDVRPFLISDGGNVDVVSVEDGVVSLKLQGACTSCPSSSTTM 136
Query: 128 KMGIERVLKEKFGDAVKDIRQVFDDDQQPAEPTPQAVNGHLDILRPAIANYGGSVEVVAV 187
MGIERVLKEKFGDA+KDIRQVFD++ + + T +AVN HLDILRPAI NYGGSVEV++V
Sbjct: 137 TMGIERVLKEKFGDALKDIRQVFDEEVK--QITVEAVNAHLDILRPAIKNYGGSVEVLSV 194
Query: 188 DGEDCLVRYEGPESIGSGIKAAIKEKFPDITNVVF 222
+GEDC+V+Y GPESIG GI+AAIKEKF DI+NV F
Sbjct: 195 EGEDCVVKYVGPESIGMGIQAAIKEKFKDISNVTF 229
>AT4G25910.1 | chr4:13164128-13165094 FORWARD LENGTH=237
Length = 236
Score = 106 bits (265), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 61/154 (39%), Positives = 92/154 (59%), Gaps = 6/154 (3%)
Query: 76 LTAENVDRVLDDVRPYLIADGGDVTVASVEDGVISLKLEGACGSCPSSTTTMKMGIERVL 135
LT ENV+RVLD+VRP L+ADGG+V + ++ V+ LKL+GACGSCPSS+ T+KMGIE L
Sbjct: 84 LTEENVERVLDEVRPSLMADGGNVALHEIDGLVVVLKLQGACGSCPSSSMTLKMGIESRL 143
Query: 136 KEKFGDAVKDIRQVFDDDQQPAEPTPQAVNGHLDILRPAIANY-GGSVEVVAVDGEDCLV 194
++K + + + Q + + E + + L LRP ++ GG +E+V +DG V
Sbjct: 144 RDKIPE-IMSVEQFLESETGGLELNDENIEKVLSELRPYLSGTGGGGLELVEIDGYVVKV 202
Query: 195 RYEGPESIGSGIKAAIKEKF----PDITNVVFLQ 224
R GP + ++ A+ +K P I V L+
Sbjct: 203 RLTGPAAGVMTVRVALTQKLRETIPSIGAVQLLE 236
>AT5G49940.1 | chr5:20315464-20317228 FORWARD LENGTH=236
Length = 235
Score = 104 bits (259), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 91/153 (59%), Gaps = 7/153 (4%)
Query: 76 LTAENVDRVLDDVRPYLIADGGDVTVASVEDGVISLKLEGACGSCPSSTTTMKMGIERVL 135
LT ENV+ VLD++RPYL++DGG+V + ++ ++ +KL+GACGSCPSST TMKMGIER L
Sbjct: 85 LTEENVESVLDEIRPYLMSDGGNVALHEIDGNIVRVKLQGACGSCPSSTMTMKMGIERRL 144
Query: 136 KEKFGDAVKDIRQVFDDDQQPAEPTPQAVNGHLDILRP-AIANYGGSVEVVAVDGEDCLV 194
EK + V + D++ E + + L+ +RP I GS+++V ++ +
Sbjct: 145 MEKIPEIVAV--EALPDEETGLELNEENIEKVLEEIRPYLIGTADGSLDLVEIEDPIVKI 202
Query: 195 RYEGPESIGSGIKAAI----KEKFPDITNVVFL 223
R GP + ++ A+ +EK P I V +
Sbjct: 203 RITGPAAGVMTVRVAVTQKLREKIPSIAAVQLI 235
>AT1G51390.1 | chr1:19050427-19051753 FORWARD LENGTH=276
Length = 275
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 88 VRPYLIADGGDVTVASV--EDGVISLKLEGACGSCPSSTTTMKMGIERVLKEKFGDAVKD 145
+RP + DGGD+ E G++ L+++GAC CPSS+ T+K GIE +L + VK
Sbjct: 199 IRPSVQDDGGDIEYCGFDTETGIVKLRMQGACSGCPSSSVTLKSGIENMLMHYVSE-VKG 257
Query: 146 IRQVFDDDQQPAEPTP 161
+ Q FD +++ P
Sbjct: 258 VEQEFDGEEEGTSSGP 273
>AT3G20970.1 | chr3:7348277-7350069 FORWARD LENGTH=284
Length = 283
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 88 VRPYLIADGGDVTVASV--EDGVISLKLEGACGSCPSSTTTMKMGIERVLKEKFGDAVKD 145
+RP + DGGD+ E G++ L+++GAC CPSS+ T+K GIE +L + VK
Sbjct: 204 IRPAVQDDGGDIEYCGFDPESGIVKLRMQGACSGCPSSSVTLKSGIENMLMH-YVSEVKG 262
Query: 146 IRQVFDDDQQ 155
+ Q FD + +
Sbjct: 263 VEQEFDGEDE 272
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.134 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,110,216
Number of extensions: 155056
Number of successful extensions: 350
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 342
Number of HSP's successfully gapped: 5
Length of query: 224
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 129
Effective length of database: 8,502,049
Effective search space: 1096764321
Effective search space used: 1096764321
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 110 (47.0 bits)