FiT-DB / Search/ Help/ Sample detail

Os11g0181500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Nitrogen fixation like protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.3 (0.0147) R2 : 0.69
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.2 (0.0376) R2dC : 0.695 R2C : 0.69
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.00242 (0.031) R2dN8 : 5.36e-06 R2N8 : -0.00466
σ : 0.278
deviance : 35.2
__
_____
C
peak time of C : 8.02
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
31.63 0.264 13.3 -0.33 1.22 -0.306 -0.0908 1.11 -0.102 8.09 2.702 1392 -- --
33.04 0.268 13.3 -0.186 1.23 -0.322 -0.0208 -- -0.0845 8.1 1.292 1399 -- --
31.65 0.262 13.3 -0.331 1.22 -0.311 -- 1.09 -0.103 8.09 2.721 1396 -- --
32.78 0.267 13.3 -0.218 1.18 -0.392 -- -- -0.0613 8.05 1 1423 -- --
49.75 0.329 13.3 0.0186 -- 1.51 -- 0.43 0.11 -- 2.361 948 -- --
34.9 0.277 13.3 -0.105 1.2 -- -0.0139 -- -0.0142 8.01 -- -- -- --
34.9 0.277 13.3 -0.106 1.2 -- -- -- -0.0142 8.01 -- -- -- --
49.49 0.328 13.3 0.032 -- 1.55 -- -- 0.0845 -- 2.598 971 -- --
33.64 0.27 13.3 -- 1.21 -0.326 -- -- -0.0408 8.11 2.02 1399 -- --
113.31 0.497 13.3 -0.094 -- -- -- -- 0.00102 -- -- -- -- --
35.2 0.278 13.3 -- 1.2 -- -- -- -0.00242 8.02 -- -- -- --
49.5 0.328 13.3 -- -- 1.55 -- -- 0.0791 -- 2.641 963 -- --
113.54 0.497 13.3 -- -- -- -- -- 0.0114 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 30.40 precipitation 0.1 1440 < th dose independent rect. 20 7
2 30.40 precipitation 0.1 1440 < th dose dependent rect. 20 7
3 31.01 precipitation 0.1 1440 > th dose independent rect. 20 7
4 31.01 precipitation 0.1 1440 > th dose dependent rect. 20 7
7 31.16 precipitation 0.1 1440 > th dose independent rect. 2 1
8 31.16 precipitation 0.1 1440 > th dose dependent rect. 2 1
9 31.21 humidity 90.0 720 > th dose dependent rect. 7 17
13 31.27 precipitation 0.1 720 > th dose dependent rect. 1 17
20 31.34 radiation 1.0 1440 > th dose independent rect. 7 9
21 31.35 radiation 1.0 1440 < th dose independent rect. 7 9
22 31.35 radiation 1.0 1440 < th dose dependent rect. 7 9
25 31.37 temperature 15.0 270 > th dose dependent rect. 2 9
32 31.41 radiation 1.0 1440 < th dose independent rect. 9 3
33 31.41 radiation 1.0 1440 < th dose dependent rect. 9 3
36 31.42 radiation 1.0 1440 < th dose dependent rect. 24 16
38 31.43 radiation 1.0 1440 < th dose dependent rect. 4 12
44 31.43 radiation 1.0 1440 < th dose dependent rect. 19 21
49 31.45 radiation 1.0 1440 < th dose independent rect. 3 13
57 31.46 radiation 1.0 1440 > th dose independent rect. 9 3
58 31.46 radiation 1.0 1440 > th dose independent rect. 4 12
87 31.50 precipitation 0.1 720 > th dose independent rect. 1 17
96 31.52 temperature 10.0 10 > th dose dependent sin 5 NA
98 31.53 radiation 1.0 1440 > th dose independent rect. 8 5
118 31.59 precipitation 0.1 720 > th dose dependent sin 2 NA
148 31.61 temperature 30.0 10 < th dose dependent sin 4 NA
176 31.65 radiation 1.0 1440 > th dose independent sin 2 NA
179 31.65 temperature 15.0 720 > th dose independent rect. 3 18
183 31.66 radiation 1.0 1440 < th dose independent sin 2 NA
184 31.66 precipitation 0.1 1440 < th dose independent rect. 2 1
187 31.66 precipitation 0.1 1440 < th dose dependent rect. 2 1
207 31.69 radiation 1.0 1440 > th dose independent rect. 7 23
220 31.71 radiation 1.0 1440 < th dose independent rect. 7 23
222 31.71 radiation 1.0 1440 < th dose dependent sin 2 NA
231 31.73 temperature 15.0 1440 > th dose independent rect. 11 1
232 31.73 atmosphere 1015.0 4320 < th dose independent rect. 17 1
272 31.76 radiation 1.0 1440 < th dose independent rect. 15 1
277 31.76 humidity 90.0 4320 > th dose dependent rect. 2 1
278 31.77 radiation 1.0 1440 > th dose independent rect. 15 1
280 31.77 humidity 90.0 720 > th dose dependent sin 21 NA
299 31.81 temperature 15.0 10 > th dose dependent rect. 3 11
302 31.82 atmosphere 1015.0 4320 < th dose independent rect. 15 3
303 31.82 temperature 15.0 720 > th dose independent rect. 17 14
312 31.83 radiation 1.0 1440 < th dose dependent rect. 15 1
317 31.84 humidity 90.0 720 > th dose independent rect. 6 20
323 31.85 temperature 30.0 10 < th dose dependent rect. 24 12
327 31.86 precipitation 0.1 720 > th dose independent sin 2 NA
331 31.86 humidity 90.0 720 > th dose independent rect. 6 18
335 31.86 humidity 80.0 1440 > th dose dependent rect. 9 4
338 31.86 atmosphere 1015.0 4320 > th dose dependent rect. 9 8
356 31.87 temperature 15.0 720 > th dose independent rect. 17 21
398 31.90 temperature 15.0 720 > th dose independent rect. 19 18
399 31.90 temperature 15.0 720 > th dose independent rect. 9 22
401 31.90 atmosphere 1015.0 4320 > th dose dependent rect. 10 5
406 31.90 temperature 30.0 90 < th dose dependent rect. 23 18
407 31.91 atmosphere 1015.0 4320 > th dose independent rect. 11 4
408 31.91 atmosphere 1015.0 4320 < th dose independent rect. 11 4
409 31.91 atmosphere 1015.0 4320 > th dose independent rect. 10 8
418 31.92 radiation 1.0 1440 > th dose independent no NA NA
425 31.92 atmosphere 1015.0 4320 < th dose independent rect. 10 8
519 31.93 radiation 1.0 1440 > th dose independent rect. 12 23
522 31.93 humidity 80.0 1440 > th dose dependent rect. 11 2
527 31.93 temperature 25.0 90 < th dose dependent rect. 1 11
530 31.94 radiation 1.0 1440 < th dose independent no NA NA
573 31.94 radiation 1.0 1440 < th dose independent rect. 12 23
642 31.96 humidity 90.0 720 > th dose dependent rect. 21 3
653 31.97 temperature 15.0 720 > th dose independent rect. 19 10
658 31.97 temperature 15.0 720 > th dose independent rect. 23 23
671 31.97 radiation 1.0 1440 < th dose dependent rect. 7 23
704 31.99 atmosphere 1015.0 4320 > th dose dependent rect. 11 2
713 31.99 temperature 30.0 10 < th dose dependent rect. 24 17
730 32.00 wind 9.0 270 < th dose dependent rect. 2 11
734 32.01 humidity 80.0 1440 > th dose independent rect. 9 4
742 32.02 atmosphere 1015.0 1440 < th dose independent rect. 1 6
759 32.02 temperature 30.0 90 < th dose dependent rect. 23 16
763 32.03 humidity 90.0 720 > th dose independent rect. 7 9
765 32.03 precipitation 0.1 270 > th dose independent rect. 20 18
783 32.04 humidity 90.0 4320 > th dose independent rect. 4 1
811 32.05 temperature 15.0 720 > th dose independent rect. 9 20
813 32.05 humidity 90.0 10 < th dose independent rect. 19 21
827 32.06 atmosphere 1015.0 1440 < th dose independent rect. 1 3
828 32.06 humidity 80.0 1440 < th dose independent rect. 8 5
848 32.07 humidity 90.0 1440 < th dose independent rect. 11 1
849 32.07 temperature 15.0 1440 > th dose independent rect. 1 3
854 32.07 precipitation 0.1 270 > th dose independent rect. 24 11
879 32.07 temperature 15.0 90 > th dose independent rect. 17 23
908 32.08 precipitation 0.1 720 > th dose independent rect. 17 23
918 32.09 temperature 15.0 720 > th dose independent rect. 9 6
958 32.09 precipitation 0.1 270 > th dose dependent rect. 24 11
981 32.10 humidity 90.0 1440 < th dose independent rect. 9 1