BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0181500 Os11g0181500|AK067601
(228 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G49940.1 | chr5:20315464-20317228 FORWARD LENGTH=236 281 2e-76
AT4G25910.1 | chr4:13164128-13165094 FORWARD LENGTH=237 235 1e-62
AT4G01940.1 | chr4:842265-843388 REVERSE LENGTH=232 106 1e-23
AT3G20970.1 | chr3:7348277-7350069 FORWARD LENGTH=284 58 3e-09
AT1G51390.1 | chr1:19050427-19051753 FORWARD LENGTH=276 58 4e-09
>AT5G49940.1 | chr5:20315464-20317228 FORWARD LENGTH=236
Length = 235
Score = 281 bits (718), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 141/197 (71%), Positives = 164/197 (83%), Gaps = 5/197 (2%)
Query: 31 IASPCGTAAHASSAPRLVAAATHRGRRRQQQVVKAIANPDPAVELPLTAENVEIVLDEVR 90
+A PC S R +++ R R+ +VVKA+A PDP +E+PLT ENVE VLDE+R
Sbjct: 44 VARPCNPLRRGLS--RFLSS---RQLFRRSKVVKAVATPDPILEVPLTEENVESVLDEIR 98
Query: 91 PYLMADGGNVALHEIDGNVVRLKLQGACGSCPASVTTMKMGIERRLMEKIPEIVAVEPIA 150
PYLM+DGGNVALHEIDGN+VR+KLQGACGSCP+S TMKMGIERRLMEKIPEIVAVE +
Sbjct: 99 PYLMSDGGNVALHEIDGNIVRVKLQGACGSCPSSTMTMKMGIERRLMEKIPEIVAVEALP 158
Query: 151 DEETGLELNQENIEKVLDEIRPYLSGTGGGELEFVAIEEPIVKVRLTGPAAGVMTVRVAL 210
DEETGLELN+ENIEKVL+EIRPYL GT G L+ V IE+PIVK+R+TGPAAGVMTVRVA+
Sbjct: 159 DEETGLELNEENIEKVLEEIRPYLIGTADGSLDLVEIEDPIVKIRITGPAAGVMTVRVAV 218
Query: 211 TQKLREKIPKIAAVQLL 227
TQKLREKIP IAAVQL+
Sbjct: 219 TQKLREKIPSIAAVQLI 235
>AT4G25910.1 | chr4:13164128-13165094 FORWARD LENGTH=237
Length = 236
Score = 235 bits (600), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 127/200 (63%), Positives = 145/200 (72%), Gaps = 6/200 (3%)
Query: 29 VGIASPCGTAAHASSAPRLVAAATHRGRRRQQQVVKAIANPDPAVELPLTAENVEIVLDE 88
+G++S C T + H R++ V ++ +PLT ENVE VLDE
Sbjct: 41 LGVSSKCSTFLRGQFQRIHFSWLQHTRPLRKRTVFGHVS-----CVMPLTEENVERVLDE 95
Query: 89 VRPYLMADGGNVALHEIDGNVVRLKLQGACGSCPASVTTMKMGIERRLMEKIPEIVAVEP 148
VRP LMADGGNVALHEIDG VV LKLQGACGSCP+S T+KMGIE RL +KIPEI++VE
Sbjct: 96 VRPSLMADGGNVALHEIDGLVVVLKLQGACGSCPSSSMTLKMGIESRLRDKIPEIMSVEQ 155
Query: 149 IADEET-GLELNQENIEKVLDEIRPYLSGTGGGELEFVAIEEPIVKVRLTGPAAGVMTVR 207
+ ET GLELN ENIEKVL E+RPYLSGTGGG LE V I+ +VKVRLTGPAAGVMTVR
Sbjct: 156 FLESETGGLELNDENIEKVLSELRPYLSGTGGGGLELVEIDGYVVKVRLTGPAAGVMTVR 215
Query: 208 VALTQKLREKIPKIAAVQLL 227
VALTQKLRE IP I AVQLL
Sbjct: 216 VALTQKLRETIPSIGAVQLL 235
>AT4G01940.1 | chr4:842265-843388 REVERSE LENGTH=232
Length = 231
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 91/146 (62%), Gaps = 3/146 (2%)
Query: 72 AVELPLTAENVEIVLDEVRPYLMADGGNVALHEIDGNVVRLKLQGACGSCPASVTTMKMG 131
A LT +NV++VL++VRP+L++DGGNV + ++ VV LKLQGAC SCP+S TTM MG
Sbjct: 80 AQTFDLTPQNVDLVLEDVRPFLISDGGNVDVVSVEDGVVSLKLQGACTSCPSSSTTMTMG 139
Query: 132 IERRLMEKIPEIVA-VEPIADEETGLELNQENIEKVLDEIRPYLSGTGGGELEFVAIEEP 190
IER L EK + + + + DEE ++ E + LD +RP + GG +E +++E
Sbjct: 140 IERVLKEKFGDALKDIRQVFDEEVK-QITVEAVNAHLDILRPAIKNY-GGSVEVLSVEGE 197
Query: 191 IVKVRLTGPAAGVMTVRVALTQKLRE 216
V+ GP + M ++ A+ +K ++
Sbjct: 198 DCVVKYVGPESIGMGIQAAIKEKFKD 223
>AT3G20970.1 | chr3:7348277-7350069 FORWARD LENGTH=284
Length = 283
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 83 EIVLDEVRPYLMADGGNVALHEID--GNVVRLKLQGACGSCPASVTTMKMGIERRLMEKI 140
E++ +RP + DGG++ D +V+L++QGAC CP+S T+K GIE LM +
Sbjct: 198 ELLETRIRPAVQDDGGDIEYCGFDPESGIVKLRMQGACSGCPSSSVTLKSGIENMLMHYV 257
Query: 141 PEIVAVEPIADEE 153
E+ VE D E
Sbjct: 258 SEVKGVEQEFDGE 270
>AT1G51390.1 | chr1:19050427-19051753 FORWARD LENGTH=276
Length = 275
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 83 EIVLDEVRPYLMADGGNVALHEIDG--NVVRLKLQGACGSCPASVTTMKMGIERRLMEKI 140
E++ +RP + DGG++ D +V+L++QGAC CP+S T+K GIE LM +
Sbjct: 193 ELLETRIRPSVQDDGGDIEYCGFDTETGIVKLRMQGACSGCPSSSVTLKSGIENMLMHYV 252
Query: 141 PEIVAVEPIADEE 153
E+ VE D E
Sbjct: 253 SEVKGVEQEFDGE 265
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.134 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,029,317
Number of extensions: 160847
Number of successful extensions: 538
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 528
Number of HSP's successfully gapped: 6
Length of query: 228
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 133
Effective length of database: 8,502,049
Effective search space: 1130772517
Effective search space used: 1130772517
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 110 (47.0 bits)