Os06g0694500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Nitrogen fixation like protein.
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Os06g0694500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Nitrogen fixation like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 74.76 | 0.406 | 11 | -0.551 | 2.12 | -0.725 | -0.789 | 0.00424 | -0.391 | 11.6 | 20.4 | 185 | -- | -- |
| 74.76 | 0.403 | 11 | -0.552 | 2.12 | -0.725 | -0.787 | -- | -0.39 | 11.6 | 20.4 | 183 | -- | -- |
| 77.19 | 0.409 | 11 | -0.633 | 2.14 | -0.732 | -- | -0.235 | -0.405 | 11.6 | 20.4 | 164 | -- | -- |
| 77.41 | 0.41 | 11 | -0.587 | 2.13 | -0.719 | -- | -- | -0.396 | 11.6 | 20.4 | 181 | -- | -- |
| 272.7 | 0.769 | 11 | -0.737 | -- | -1.34 | -- | -0.531 | -0.198 | -- | 25.29 | 859 | -- | -- |
| 93.68 | 0.454 | 11 | -0.77 | 2.02 | -- | -0.751 | -- | -0.531 | 11.5 | -- | -- | -- | -- |
| 96.1 | 0.459 | 11 | -0.801 | 2.02 | -- | -- | -- | -0.535 | 11.4 | -- | -- | -- | -- |
| 265.29 | 0.759 | 11 | -0.381 | -- | -1.43 | -- | -- | -0.0311 | -- | 25.1 | 866 | -- | -- |
| 85.85 | 0.432 | 11 | -- | 2.12 | -0.838 | -- | -- | -0.307 | 11.7 | 20.4 | 201 | -- | -- |
| 352.38 | 0.877 | 11.1 | -0.854 | -- | -- | -- | -- | -0.556 | -- | -- | -- | -- | -- |
| 112.99 | 0.497 | 11 | -- | 2.03 | -- | -- | -- | -0.446 | 11.5 | -- | -- | -- | -- |
| 268.76 | 0.764 | 10.9 | -- | -- | -1.55 | -- | -- | 0.0387 | -- | 25.2 | 860 | -- | -- |
| 371.62 | 0.9 | 11 | -- | -- | -- | -- | -- | -0.461 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 70.27 | temperature | 20 | 720 | > th | dose independent | rect. | 15 | 10 |
| 2 | 70.43 | temperature | 20 | 720 | > th | dose independent | rect. | 14 | 12 |
| 4 | 70.47 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 15 |
| 16 | 71.61 | temperature | 25 | 90 | < th | dose dependent | rect. | 16 | 18 |
| 18 | 71.69 | temperature | 20 | 720 | < th | dose independent | rect. | 12 | 12 |
| 29 | 72.07 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 4 |
| 32 | 72.18 | temperature | 20 | 270 | > th | dose independent | rect. | 19 | 8 |
| 38 | 72.28 | temperature | 20 | 270 | > th | dose independent | rect. | 6 | 21 |
| 48 | 72.40 | temperature | 20 | 720 | < th | dose dependent | rect. | 15 | 9 |
| 61 | 72.55 | temperature | 20 | 720 | < th | dose dependent | rect. | 10 | 14 |
| 77 | 72.72 | temperature | 20 | 720 | > th | dose independent | sin | 19 | NA |
| 90 | 72.86 | temperature | 15 | 720 | > th | dose dependent | rect. | 14 | 12 |
| 107 | 72.96 | temperature | 15 | 720 | > th | dose dependent | rect. | 15 | 9 |
| 111 | 72.99 | temperature | 20 | 720 | > th | dose independent | rect. | 7 | 18 |
| 130 | 73.14 | temperature | 15 | 270 | > th | dose dependent | sin | 11 | NA |
| 143 | 73.20 | temperature | 20 | 720 | > th | dose independent | rect. | 9 | 16 |
| 167 | 73.29 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 9 |
| 177 | 73.37 | temperature | 20 | 270 | > th | dose independent | sin | 11 | NA |
| 191 | 73.48 | temperature | 20 | 270 | < th | dose independent | rect. | 15 | 17 |
| 205 | 73.55 | temperature | 20 | 720 | < th | dose independent | sin | 18 | NA |
| 225 | 73.66 | temperature | 20 | 720 | > th | dose independent | sin | 17 | NA |
| 265 | 73.81 | temperature | 25 | 720 | < th | dose dependent | sin | 19 | NA |
| 332 | 74.02 | temperature | 20 | 270 | < th | dose dependent | sin | 12 | NA |
| 567 | 74.82 | temperature | 10 | 720 | > th | dose dependent | sin | 17 | NA |
| 617 | 74.93 | temperature | 20 | 270 | > th | dose independent | rect. | 20 | 14 |
| 757 | 75.33 | temperature | 20 | 270 | < th | dose independent | sin | 12 | NA |
| 990 | 76.05 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 22 |