BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0694500 Os06g0694500|AK067484
(219 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G25910.1 | chr4:13164128-13165094 FORWARD LENGTH=237 260 3e-70
AT5G49940.1 | chr5:20315464-20317228 FORWARD LENGTH=236 242 1e-64
AT4G01940.1 | chr4:842265-843388 REVERSE LENGTH=232 102 2e-22
AT1G51390.1 | chr1:19050427-19051753 FORWARD LENGTH=276 62 3e-10
AT3G20970.1 | chr3:7348277-7350069 FORWARD LENGTH=284 61 5e-10
>AT4G25910.1 | chr4:13164128-13165094 FORWARD LENGTH=237
Length = 236
Score = 260 bits (665), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 134/180 (74%), Positives = 152/180 (84%), Gaps = 1/180 (0%)
Query: 41 RLSFSHTSLQSPNNRGKRTGWAVRVLPLTEENVEMVLDQVRPSLMADGGNVALHEIDGLV 100
R+ FS P + G V+PLTEENVE VLD+VRPSLMADGGNVALHEIDGLV
Sbjct: 57 RIHFSWLQHTRPLRKRTVFGHVSCVMPLTEENVERVLDEVRPSLMADGGNVALHEIDGLV 116
Query: 101 VVLKLQGACGSCPSSTMTLKMGIETRLRDKIPEILAVEQIVDTET-GLELNHDNVDKVLD 159
VVLKLQGACGSCPSS+MTLKMGIE+RLRDKIPEI++VEQ +++ET GLELN +N++KVL
Sbjct: 117 VVLKLQGACGSCPSSSMTLKMGIESRLRDKIPEIMSVEQFLESETGGLELNDENIEKVLS 176
Query: 160 EIRPYLSGTGGGSLDLVQIDESVVKVRLTGPAAGVMTVRVAVTQKLREKIPSILAVQLTE 219
E+RPYLSGTGGG L+LV+ID VVKVRLTGPAAGVMTVRVA+TQKLRE IPSI AVQL E
Sbjct: 177 ELRPYLSGTGGGGLELVEIDGYVVKVRLTGPAAGVMTVRVALTQKLRETIPSIGAVQLLE 236
>AT5G49940.1 | chr5:20315464-20317228 FORWARD LENGTH=236
Length = 235
Score = 242 bits (617), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 117/152 (76%), Positives = 137/152 (90%)
Query: 66 LPLTEENVEMVLDQVRPSLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIET 125
+PLTEENVE VLD++RP LM+DGGNVALHEIDG +V +KLQGACGSCPSSTMT+KMGIE
Sbjct: 83 VPLTEENVESVLDEIRPYLMSDGGNVALHEIDGNIVRVKLQGACGSCPSSTMTMKMGIER 142
Query: 126 RLRDKIPEILAVEQIVDTETGLELNHDNVDKVLDEIRPYLSGTGGGSLDLVQIDESVVKV 185
RL +KIPEI+AVE + D ETGLELN +N++KVL+EIRPYL GT GSLDLV+I++ +VK+
Sbjct: 143 RLMEKIPEIVAVEALPDEETGLELNEENIEKVLEEIRPYLIGTADGSLDLVEIEDPIVKI 202
Query: 186 RLTGPAAGVMTVRVAVTQKLREKIPSILAVQL 217
R+TGPAAGVMTVRVAVTQKLREKIPSI AVQL
Sbjct: 203 RITGPAAGVMTVRVAVTQKLREKIPSIAAVQL 234
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 48/76 (63%), Gaps = 5/76 (6%)
Query: 66 LPLTEENVEMVLDQVRPSLMADG-GNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIE 124
L L EEN+E VL+++RP L+ G++ L EI+ +V +++ G + MT+++ +
Sbjct: 164 LELNEENIEKVLEEIRPYLIGTADGSLDLVEIEDPIVKIRITGPA----AGVMTVRVAVT 219
Query: 125 TRLRDKIPEILAVEQI 140
+LR+KIP I AV+ I
Sbjct: 220 QKLREKIPSIAAVQLI 235
>AT4G01940.1 | chr4:842265-843388 REVERSE LENGTH=232
Length = 231
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/159 (36%), Positives = 98/159 (61%), Gaps = 4/159 (2%)
Query: 51 SPNNRGKRTG-WAVRVLPLTEENVEMVLDQVRPSLMADGGNVALHEIDGLVVVLKLQGAC 109
SP G +G ++ + LT +NV++VL+ VRP L++DGGNV + ++ VV LKLQGAC
Sbjct: 67 SPLASGVSSGLYSAQTFDLTPQNVDLVLEDVRPFLISDGGNVDVVSVEDGVVSLKLQGAC 126
Query: 110 GSCPSSTMTLKMGIETRLRDKIPEILA-VEQIVDTETGLELNHDNVDKVLDEIRPYLSGT 168
SCPSS+ T+ MGIE L++K + L + Q+ D E ++ + V+ LD +RP +
Sbjct: 127 TSCPSSSTTMTMGIERVLKEKFGDALKDIRQVFDEEVK-QITVEAVNAHLDILRPAIKNY 185
Query: 169 GGGSLDLVQIDESVVKVRLTGPAAGVMTVRVAVTQKLRE 207
GGS++++ ++ V+ GP + M ++ A+ +K ++
Sbjct: 186 -GGSVEVLSVEGEDCVVKYVGPESIGMGIQAAIKEKFKD 223
>AT1G51390.1 | chr1:19050427-19051753 FORWARD LENGTH=276
Length = 275
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
Query: 74 EMVLDQVRPSLMADGGNVALHEIDGL--VVVLKLQGACGSCPSSTMTLKMGIETRLRDKI 131
E++ ++RPS+ DGG++ D +V L++QGAC CPSS++TLK GIE L +
Sbjct: 193 ELLETRIRPSVQDDGGDIEYCGFDTETGIVKLRMQGACSGCPSSSVTLKSGIENMLMHYV 252
Query: 132 PEILAVEQIVDTE 144
E+ VEQ D E
Sbjct: 253 SEVKGVEQEFDGE 265
>AT3G20970.1 | chr3:7348277-7350069 FORWARD LENGTH=284
Length = 283
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
Query: 74 EMVLDQVRPSLMADGGNVALHEID--GLVVVLKLQGACGSCPSSTMTLKMGIETRLRDKI 131
E++ ++RP++ DGG++ D +V L++QGAC CPSS++TLK GIE L +
Sbjct: 198 ELLETRIRPAVQDDGGDIEYCGFDPESGIVKLRMQGACSGCPSSSVTLKSGIENMLMHYV 257
Query: 132 PEILAVEQIVDTE 144
E+ VEQ D E
Sbjct: 258 SEVKGVEQEFDGE 270
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.134 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,065,138
Number of extensions: 156589
Number of successful extensions: 481
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 465
Number of HSP's successfully gapped: 6
Length of query: 219
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 124
Effective length of database: 8,502,049
Effective search space: 1054254076
Effective search space used: 1054254076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 109 (46.6 bits)