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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0176200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Nitrogen fixation like protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.41 (0.0415) R2 : 0.45
β1 : 1.04 (0.151) R2dD : 0.0612 R2D : 0.0401
β2 : -- (--) R2dC : -- R2C : --
β3 : -2.59 (0.174) R2dE : 0.33 R2E : 0.0422
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -11.9 (0.783) R2dD*E : 0.341 R2D*E : 0.0893
γ1 : 0.0652 (0.0903) R2dN8 : 0.000908 R2N8 : -0.00692
σ : 0.766
deviance : 270.43
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 6.8
memory length : 4324
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 19
open length of G : 3.02

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
267.5 0.768 3.41 1.03 0.194 -2.51 0.544 -11.7 0.067 13.4 6.8 4321 19 3.03
358.02 0.881 3.41 0.889 0.183 -1.63 0.394 -- 0.135 13.1 8.003 4319 18.9 2.98
268.34 0.763 3.41 1.06 0.186 -2.56 -- -11.9 0.0664 12.7 6.772 4323 19 3.02
300.37 0.807 3.4 0.462 0.187 -2.69 -- -- 0.108 10.5 8.091 4319 19.3 1.31
270.43 0.766 3.41 1.04 -- -2.59 -- -11.9 0.0652 -- 6.8 4324 19 3.02
464.66 1.01 3.39 0.839 0.262 -- 0.576 -- -0.0796 12.4 -- -- -- --
466.06 1.01 3.38 0.86 0.261 -- -- -- -0.0773 12.1 -- -- -- --
302.04 0.809 3.4 0.455 -- -2.67 -- -- 0.0564 -- 8.082 4319 19.4 1.19
305.25 0.814 3.4 -- 0.157 -2.76 -- -- 0.0234 10.8 8.09 4320 19.4 1.35
470.35 1.01 3.39 0.852 -- -- -- -- -0.0811 -- -- -- -- --
485.56 1.03 3.41 -- 0.25 -- -- -- -0.173 11.9 -- -- -- --
301.32 0.808 3.4 -- -- -2.78 -- -- 0.0361 -- 8.617 4320 19.4 1.36
489.49 1.03 3.41 -- -- -- -- -- -0.176 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 275.53 wind 5 4320 > th dose dependent rect. 20 3
5 278.12 wind 7 4320 < th dose independent rect. 19 3
17 282.27 wind 7 4320 > th dose independent rect. 19 3
29 283.73 wind 9 4320 > th dose dependent rect. 19 7
136 292.35 humidity 90 1440 < th dose dependent rect. 3 1
145 294.96 atmosphere 995 14400 < th dose independent rect. 16 1
147 295.21 atmosphere 995 14400 < th dose dependent rect. 16 1
169 295.56 atmosphere 995 14400 > th dose independent rect. 17 1
176 295.90 atmosphere 995 14400 > th dose independent rect. 16 4
218 297.36 atmosphere 995 14400 > th dose independent rect. 13 7
219 297.39 atmosphere 995 14400 > th dose independent rect. 10 10
225 297.55 atmosphere 995 14400 > th dose independent rect. 7 13
294 299.63 humidity 90 1440 < th dose dependent rect. 2 5
324 301.05 humidity 90 1440 < th dose dependent rect. 24 7
458 310.86 humidity 70 1440 > th dose dependent rect. 1 6
478 311.59 atmosphere 995 14400 > th dose independent rect. 20 20
514 313.05 radiation 1 14400 < th dose dependent rect. 23 1
516 313.07 atmosphere 995 14400 > th dose independent sin 22 NA
528 313.37 atmosphere 995 14400 < th dose independent sin 22 NA
534 313.58 radiation 1 14400 < th dose dependent rect. 23 3
542 313.78 humidity 90 1440 < th dose dependent rect. 5 1
553 314.05 atmosphere 995 14400 < th dose dependent sin 23 NA
557 314.10 atmosphere 995 14400 > th dose independent sin 4 NA
597 315.34 atmosphere 995 14400 < th dose independent sin 3 NA
696 317.12 radiation 1 14400 < th dose dependent rect. 20 8
733 317.46 humidity 80 1440 < th dose independent rect. 22 1
838 318.44 humidity 50 1440 > th dose dependent rect. 1 3
868 318.59 atmosphere 995 14400 > th dose independent no NA NA
869 318.59 atmosphere 995 14400 > th dose independent rect. 14 23
872 318.60 atmosphere 995 14400 > th dose independent rect. 10 23
873 318.60 atmosphere 995 14400 > th dose independent rect. 12 23
878 318.61 humidity 70 1440 > th dose dependent rect. 3 1
886 318.65 atmosphere 995 14400 > th dose independent rect. 12 21
902 318.81 humidity 70 1440 > th dose dependent rect. 5 1