BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0662200 Os06g0662200|AK065941
(295 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0662200 Eukaryotic transcription factor, DNA-binding d... 525 e-149
Os02g0266800 Transcriptional activator protein 156 2e-38
Os02g0175100 Similar to Transcriptional activator protein 154 9e-38
Os03g0796900 BZIP protein 77 2e-14
>Os06g0662200 Eukaryotic transcription factor, DNA-binding domain containing
protein
Length = 295
Score = 525 bits (1353), Expect = e-149, Method: Compositional matrix adjust.
Identities = 265/295 (89%), Positives = 265/295 (89%)
Query: 1 MMKKCPSELQLEAFIREEAGAGDRKPGVLSPGDGARKSGLFSPGDGEMSVLDQSTLDGSG 60
MMKKCPSELQLEAFIREEAGAGDRKPGVLSPGDGARKSGLFSPGDGEMSVLDQSTLDGSG
Sbjct: 1 MMKKCPSELQLEAFIREEAGAGDRKPGVLSPGDGARKSGLFSPGDGEMSVLDQSTLDGSG 60
Query: 61 GGHQLWWPESVRTPPRXXXXXXXXXDERTPASISDDPKPTTSANHAPEXXXXXXXXXLLE 120
GGHQLWWPESVRTPPR DERTPASISDDPKPTTSANHAPE LLE
Sbjct: 61 GGHQLWWPESVRTPPRAAAAFSATADERTPASISDDPKPTTSANHAPESDSDSDCDSLLE 120
Query: 121 AERSPRLRGTKSTETKRIRRMVXXXXXXXXXXXXKQAQLSELESQVEQLKGENSSLFKQL 180
AERSPRLRGTKSTETKRIRRMV KQAQLSELESQVEQLKGENSSLFKQL
Sbjct: 121 AERSPRLRGTKSTETKRIRRMVSNRESARRSRRRKQAQLSELESQVEQLKGENSSLFKQL 180
Query: 181 TESSQQFNTAVTDNRILKSDVEALRVKVKMAEDMVARAAMSCGLGQLGLAPLLSSRKMCQ 240
TESSQQFNTAVTDNRILKSDVEALRVKVKMAEDMVARAAMSCGLGQLGLAPLLSSRKMCQ
Sbjct: 181 TESSQQFNTAVTDNRILKSDVEALRVKVKMAEDMVARAAMSCGLGQLGLAPLLSSRKMCQ 240
Query: 241 ALDMLSLPRNDACGFKGLNLGRQVQNSPVQSAASLESLDNRISSEVTSCSADVWP 295
ALDMLSLPRNDACGFKGLNLGRQVQNSPVQSAASLESLDNRISSEVTSCSADVWP
Sbjct: 241 ALDMLSLPRNDACGFKGLNLGRQVQNSPVQSAASLESLDNRISSEVTSCSADVWP 295
>Os02g0266800 Transcriptional activator protein
Length = 298
Score = 156 bits (394), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 115/277 (41%), Positives = 141/277 (50%), Gaps = 15/277 (5%)
Query: 2 MKKCPSELQLEAFIREEAGAGDRKPGVLSPGDGARKS---GLFSPGD-GEMSVLDQSTLD 57
MKKCPSEL EAF E G D G +FS D D T
Sbjct: 1 MKKCPSELNFEAFFHGERGEDDADAAADQKPGGGPHPPPFAMFSAADLSSFGFADSVTST 60
Query: 58 GSGGGHQLWWPESVRTPPRXXXXXXXXXDERTPASISDDPKPTTSANHAPEXX------X 111
+G WP+S R A+ S P T+ N
Sbjct: 61 ITGVIPNHIWPQSQSLNARHPAVYTIESQSSICAAAS--PTSATTLNMKESQTLGGTSGS 118
Query: 112 XXXXXXLLEAERSPRLRGTKSTETKRIRRMVXXXXXXXXXXXXKQAQLSELESQVEQLKG 171
LL+ E P + T + KR+RRMV KQA L++LE+QV+QL+G
Sbjct: 119 DSDSESLLDIEGGPCEQSTNPLDVKRMRRMVSNRESARRSRKRKQAHLADLETQVDQLRG 178
Query: 172 ENSSLFKQLTESSQQFNTAVTDNRILKSDVEALRVKVKMAEDMVARAAMSCGLGQL-GLA 230
EN+SLFKQLT+++QQF TAVTDNRILKSDVEALRVKVKMAEDMVAR A+SCGLG L GL+
Sbjct: 179 ENASLFKQLTDANQQFTTAVTDNRILKSDVEALRVKVKMAEDMVARGALSCGLGHLGGLS 238
Query: 231 PLLSSRK-MCQALDMLS-LPRNDACGFKGLNLGRQVQ 265
P L+ R+ C+ D+L+ L F GL+ QVQ
Sbjct: 239 PALNPRQGACRVPDVLTGLDYAGDDPFTGLSPPEQVQ 275
>Os02g0175100 Similar to Transcriptional activator protein
Length = 278
Score = 154 bits (388), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 96/218 (44%), Positives = 124/218 (56%), Gaps = 15/218 (6%)
Query: 39 GLFSPGD-GEMSVLDQSTLDGSGGGHQLWWPESVRTPPRXXXXXXXXXDERTPASISDDP 97
G+FS D D ST+ G H WP+S R + +SI
Sbjct: 23 GIFSAADLSGFGFADSSTITGGIPNH--IWPQSQNLNARHPAVSTTIESQ---SSICAAA 77
Query: 98 KPTTSANHAPEXXXX--------XXXXXLLEAERSPRLRGTKSTETKRIRRMVXXXXXXX 149
PT++ N + LL+ E P + T + KR+RRMV
Sbjct: 78 SPTSATNLNMKESQTLGGTSGSDSESESLLDIEGGPCEQSTNPLDVKRVRRMVSNRESAR 137
Query: 150 XXXXXKQAQLSELESQVEQLKGENSSLFKQLTESSQQFNTAVTDNRILKSDVEALRVKVK 209
KQA L++LESQV+QL+GEN+SLFKQLT+++QQF T+VTDNRILKSDVEALRVKVK
Sbjct: 138 RSRKRKQAHLADLESQVDQLRGENASLFKQLTDANQQFTTSVTDNRILKSDVEALRVKVK 197
Query: 210 MAEDMVARAAMSCGLGQL-GLAPLLSSRKMCQALDMLS 246
MAEDMVAR A+SCGLG L GL+P L+ R+ C+ D+L+
Sbjct: 198 MAEDMVARGALSCGLGHLGGLSPALNPRQACRVPDVLA 235
>Os03g0796900 BZIP protein
Length = 425
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/60 (60%), Positives = 47/60 (78%)
Query: 158 QLSELESQVEQLKGENSSLFKQLTESSQQFNTAVTDNRILKSDVEALRVKVKMAEDMVAR 217
L+ELE+QV QL+ ENSSL ++L + +Q++N A DNR+LK+DVE LR KVKMAED V R
Sbjct: 256 HLNELEAQVSQLRVENSSLLRRLADVNQKYNDAAVDNRVLKADVETLRAKVKMAEDSVKR 315
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.311 0.127 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,092,024
Number of extensions: 402060
Number of successful extensions: 946
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 942
Number of HSP's successfully gapped: 5
Length of query: 295
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 195
Effective length of database: 11,814,401
Effective search space: 2303808195
Effective search space used: 2303808195
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 156 (64.7 bits)