BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0659500 Os06g0659500|AK058431
         (77 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0659500  Similar to Glutaredoxin                             155   6e-39
Os02g0646400  Similar to Glutaredoxin                              92   9e-20
Os02g0618100  Similar to Glutaredoxin                              67   2e-12
Os04g0508300  Glutaredoxin                                         67   4e-12

>Os06g0659500 Similar to Glutaredoxin
          Length = 77

 Score =  155 bits (392), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 77/77 (100%), Positives = 77/77 (100%)

Query: 1  KAVFKELELKKEPYVVELDQREDGWEIQDALSDMVGRRTVPQVFVHGKHLGGSDDTVEAY 60
          KAVFKELELKKEPYVVELDQREDGWEIQDALSDMVGRRTVPQVFVHGKHLGGSDDTVEAY
Sbjct: 1  KAVFKELELKKEPYVVELDQREDGWEIQDALSDMVGRRTVPQVFVHGKHLGGSDDTVEAY 60

Query: 61 ESGKLAKLLNIDVKEDL 77
          ESGKLAKLLNIDVKEDL
Sbjct: 61 ESGKLAKLLNIDVKEDL 77



>Os02g0646400 Similar to Glutaredoxin
          Length = 131

 Score = 92.0 bits (227), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 43/69 (62%), Positives = 55/69 (79%), Gaps = 2/69 (2%)

Query: 1   KAVFKELELKKEPYVVELDQREDGWEIQDALSDMVGRRTVPQVFVHGKHLGGSDDTVEAY 60
           K +F++L  K+ PY+VELD REDG EIQ  L D+VGR TVPQVFV+G+H+GGSDDT  A+
Sbjct: 58  KRIFRDL--KENPYIVELDLREDGREIQSVLLDLVGRHTVPQVFVNGQHVGGSDDTANAH 115

Query: 61  ESGKLAKLL 69
            +G+L KLL
Sbjct: 116 SNGQLQKLL 124



>Os02g0618100 Similar to Glutaredoxin
          Length = 129

 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/63 (50%), Positives = 40/63 (63%)

Query: 8   ELKKEPYVVELDQREDGWEIQDALSDMVGRRTVPQVFVHGKHLGGSDDTVEAYESGKLAK 67
           EL      VELD   DG E+Q AL+D  G+RTVP VF+ GKH+GG DDT+  ++ G L  
Sbjct: 57  ELAASYKAVELDVESDGSELQSALADWTGQRTVPCVFIKGKHIGGCDDTMAMHKGGNLVP 116

Query: 68  LLN 70
           LL 
Sbjct: 117 LLT 119



>Os04g0508300 Glutaredoxin
          Length = 112

 Score = 66.6 bits (161), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 38/55 (69%)

Query: 16 VELDQREDGWEIQDALSDMVGRRTVPQVFVHGKHLGGSDDTVEAYESGKLAKLLN 70
          +ELD   DG E+Q AL++  G+RTVP VF++GKH+GG DDT+     GKL  LL 
Sbjct: 43 IELDGESDGSELQSALAEWTGQRTVPNVFINGKHIGGCDDTLALNNEGKLVPLLT 97



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.313    0.136    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,632,482
Number of extensions: 92898
Number of successful extensions: 174
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 4
Length of query: 77
Length of database: 17,035,801
Length adjustment: 48
Effective length of query: 29
Effective length of database: 14,529,529
Effective search space: 421356341
Effective search space used: 421356341
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 149 (62.0 bits)