BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0625500 Os06g0625500|AK058459
(232 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0625500 Similar to Thioredoxin peroxidase 340 7e-94
Os02g0192700 Similar to Thioredoxin peroxidase 288 2e-78
Os01g0675100 peroxiredoxin [Oryza sativa (japonica cultivar... 188 3e-48
Os01g0266600 Redoxin domain containing protein 113 1e-25
Os01g0349300 102 2e-22
>Os06g0625500 Similar to Thioredoxin peroxidase
Length = 232
Score = 340 bits (871), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 177/193 (91%), Positives = 177/193 (91%)
Query: 40 GRIAVMPHLRAGILXXXXXXXXXXXXXXXXTIAVGDKLPDATLSYFDSPDGELKTVTVRD 99
GRIAVMPHLRAGIL TIAVGDKLPDATLSYFDSPDGELKTVTVRD
Sbjct: 40 GRIAVMPHLRAGILSAAPRRAVSASAPAAATIAVGDKLPDATLSYFDSPDGELKTVTVRD 99
Query: 100 LTAGKKVVLFAVPGAFTPTCTQKHVPGFVAKAGELRAKGVDAVACVSVNDAFVMRAWKES 159
LTAGKKVVLFAVPGAFTPTCTQKHVPGFVAKAGELRAKGVDAVACVSVNDAFVMRAWKES
Sbjct: 100 LTAGKKVVLFAVPGAFTPTCTQKHVPGFVAKAGELRAKGVDAVACVSVNDAFVMRAWKES 159
Query: 160 LGVGDEVLLLSDGNGELARAMGVELDLSDKPAGLGVRSRRYALLAEDGVVKVLNLEEGGA 219
LGVGDEVLLLSDGNGELARAMGVELDLSDKPAGLGVRSRRYALLAEDGVVKVLNLEEGGA
Sbjct: 160 LGVGDEVLLLSDGNGELARAMGVELDLSDKPAGLGVRSRRYALLAEDGVVKVLNLEEGGA 219
Query: 220 FTTSSAEEMLKAL 232
FTTSSAEEMLKAL
Sbjct: 220 FTTSSAEEMLKAL 232
>Os02g0192700 Similar to Thioredoxin peroxidase
Length = 225
Score = 288 bits (737), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 143/164 (87%), Positives = 154/164 (93%), Gaps = 1/164 (0%)
Query: 70 TIAVGDKLPDATLSYFDSPDGELKTVTVRDLTAGKKVVLFAVPGAFTPTCTQKHVPGFVA 129
TIAVGDKLPDATLSYFD DGELKTVTV +LTAG+K VLFAVPGAFTPTC+QKH+PGF+
Sbjct: 62 TIAVGDKLPDATLSYFDPADGELKTVTVAELTAGRKAVLFAVPGAFTPTCSQKHLPGFIE 121
Query: 130 KAGELRAKGVDAVACVSVNDAFVMRAWKESLGVGD-EVLLLSDGNGELARAMGVELDLSD 188
KAGEL AKGVDA+ACVSVNDAFVMRAWKESLG+GD +VLLLSDGN EL RA+GVE+DLSD
Sbjct: 122 KAGELHAKGVDAIACVSVNDAFVMRAWKESLGLGDADVLLLSDGNLELTRALGVEMDLSD 181
Query: 189 KPAGLGVRSRRYALLAEDGVVKVLNLEEGGAFTTSSAEEMLKAL 232
KP GLGVRSRRYALLA+DGVVKVLNLEEGGAFTTSSAEEMLKAL
Sbjct: 182 KPMGLGVRSRRYALLADDGVVKVLNLEEGGAFTTSSAEEMLKAL 225
>Os01g0675100 peroxiredoxin [Oryza sativa (japonica cultivar-group)]
Length = 162
Score = 188 bits (478), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 96/162 (59%), Positives = 121/162 (74%), Gaps = 3/162 (1%)
Query: 71 IAVGDKLPDATLSYFDSPDGELKTVTVRDLTAGKKVVLFAVPGAFTPTCTQKHVPGFVAK 130
+AVGD LPD L +FD D +L+ V+V L AGKKVVLF VPGAFTPTC+ +HVPGF+ +
Sbjct: 4 VAVGDTLPDGQLGWFDGED-KLQQVSVHGLAAGKKVVLFGVPGAFTPTCSNQHVPGFINQ 62
Query: 131 AGELRAKGVDAVACVSVNDAFVMRAWKESLGVGDEVLLLSDGNGELARAMGVELDLSDKP 190
A +L+AKGVD + VSVND FVM+AW +S V L+DG G +A+G+ELDLS+K
Sbjct: 63 AEQLKAKGVDDILLVSVNDPFVMKAWAKSYPENKHVKFLADGLGTYTKALGLELDLSEK- 121
Query: 191 AGLGVRSRRYALLAEDGVVKVLNLEEGGAFTTSSAEEMLKAL 232
GLG+RSRR+ALLA++ V V N+EEGG FT S AEE+LKAL
Sbjct: 122 -GLGIRSRRFALLADNLKVTVANIEEGGQFTISGAEEILKAL 162
>Os01g0266600 Redoxin domain containing protein
Length = 198
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 84/143 (58%), Gaps = 3/143 (2%)
Query: 91 ELKTVTVRDLTAGKKVVLFAVPGAFTPTCTQKHVPGFVAKAGELRAKGVDAVACVSVNDA 150
T ++D+ GKKVV+F +PGA+T C+Q HVP + +L+AKGVD+V CVSVND
Sbjct: 58 NFSTTPLKDIFHGKKVVIFGLPGAYTGVCSQAHVPSYKNNIDKLKAKGVDSVICVSVNDP 117
Query: 151 FVMRAWKESLGVGDEVLLLSDGNGELARAMGVELDLSDKPAGLGVRSRRYALLAEDGVVK 210
+ + W E L D + D +G +++ +E+DLS A LG RS R++ +DG +K
Sbjct: 118 YALNGWAEKLQAKDAIEFYGDFDGSFHKSLDLEVDLS--AALLGRRSHRWSAFVDDGKIK 175
Query: 211 VLNLEEGGA-FTTSSAEEMLKAL 232
N+E + F S AE +L +
Sbjct: 176 AFNVEVAPSDFKVSGAEVILDQI 198
>Os01g0349300
Length = 106
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/77 (71%), Positives = 57/77 (74%)
Query: 156 WKESLGVGDEVLLLSDGNGELARAMGVELDLSDKPAGLGVRSRRYALLAEDGVVKVLNLE 215
W VLLLS NGELA A+GVELDL DKPAG VRSR YA L EDGVVKVLNL+
Sbjct: 30 WLAFFAAVMRVLLLSHSNGELAHALGVELDLPDKPAGHDVRSRCYAFLVEDGVVKVLNLK 89
Query: 216 EGGAFTTSSAEEMLKAL 232
EG AFTTSS EEMLKAL
Sbjct: 90 EGVAFTTSSIEEMLKAL 106
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.136 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,054,766
Number of extensions: 241531
Number of successful extensions: 446
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 441
Number of HSP's successfully gapped: 5
Length of query: 232
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 134
Effective length of database: 11,918,829
Effective search space: 1597123086
Effective search space used: 1597123086
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 154 (63.9 bits)