Os06g0625500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Thioredoxin peroxidase.
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Os06g0625500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Thioredoxin peroxidase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.4 | 0.28 | 12.5 | 0.735 | 1.08 | 0.838 | -0.129 | 0.229 | 0.151 | 17.8 | 22.88 | 30 | -- | -- |
| 35.42 | 0.277 | 12.5 | 0.7 | 1.07 | 0.858 | -0.103 | -- | 0.14 | 17.8 | 22.87 | 27 | -- | -- |
| 35.42 | 0.277 | 12.5 | 0.731 | 1.08 | 0.832 | -- | 0.199 | 0.148 | 17.8 | 22.72 | 27 | -- | -- |
| 35.42 | 0.277 | 12.5 | 0.707 | 1.08 | 0.852 | -- | -- | 0.142 | 17.8 | 22.9 | 21 | -- | -- |
| 67.81 | 0.384 | 12.5 | 0.432 | -- | 1.69 | -- | -1.01 | 0.0321 | -- | 24.4 | 266 | -- | -- |
| 46.31 | 0.319 | 12.5 | 0.866 | 1.34 | -- | 0.375 | -- | 0.267 | 17.1 | -- | -- | -- | -- |
| 46.65 | 0.32 | 12.5 | 0.866 | 1.34 | -- | -- | -- | 0.268 | 17.1 | -- | -- | -- | -- |
| 69.08 | 0.387 | 12.5 | 0.56 | -- | 1.59 | -- | -- | 0.0773 | -- | 24.2 | 259 | -- | -- |
| 47.47 | 0.321 | 12.5 | -- | 1.02 | 1.07 | -- | -- | 0.0256 | 18 | 22.29 | 27 | -- | -- |
| 140.87 | 0.555 | 12.5 | 0.818 | -- | -- | -- | -- | 0.234 | -- | -- | -- | -- | -- |
| 66.43 | 0.381 | 12.5 | -- | 1.33 | -- | -- | -- | 0.172 | 17.1 | -- | -- | -- | -- |
| 77.02 | 0.409 | 12.5 | -- | -- | 1.68 | -- | -- | -0.00316 | -- | 23.97 | 258 | -- | -- |
| 158.54 | 0.588 | 12.5 | -- | -- | -- | -- | -- | 0.144 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.08 | temperature | 10 | 90 | > th | dose dependent | sin | 23 | NA |
| 28 | 33.76 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 14 |
| 38 | 33.90 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 11 |
| 40 | 33.97 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 9 |
| 47 | 34.06 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 16 |
| 54 | 34.15 | temperature | 30 | 90 | < th | dose dependent | sin | 23 | NA |
| 68 | 34.27 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 16 |
| 76 | 34.37 | temperature | 30 | 270 | < th | dose dependent | sin | 1 | NA |
| 83 | 34.45 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 14 |
| 105 | 34.62 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 18 |
| 122 | 34.73 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 8 |
| 123 | 34.73 | temperature | 25 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 181 | 35.07 | temperature | 20 | 30 | > th | dose dependent | rect. | 4 | 14 |
| 249 | 35.32 | temperature | 20 | 30 | > th | dose dependent | rect. | 8 | 10 |
| 330 | 35.55 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 343 | 35.59 | temperature | 20 | 30 | > th | dose dependent | rect. | 4 | 18 |
| 368 | 35.66 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 8 |
| 415 | 35.77 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 14 |
| 456 | 35.86 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 17 |
| 522 | 35.93 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 689 | 36.09 | temperature | 25 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 731 | 36.14 | temperature | 25 | 30 | > th | dose dependent | no | NA | NA |
| 744 | 36.15 | atmosphere | 1000 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 745 | 36.15 | atmosphere | 1000 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 938 | 36.31 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 1 |