BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0625500 Os06g0625500|AK058459
(232 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G52960.1 | chr3:19639699-19640403 FORWARD LENGTH=235 270 6e-73
AT1G65980.1 | chr1:24559524-24560753 REVERSE LENGTH=163 191 3e-49
AT1G60740.1 | chr1:22361127-22361817 FORWARD LENGTH=163 189 9e-49
AT1G65970.1 | chr1:24557527-24558229 REVERSE LENGTH=163 188 2e-48
AT1G65990.1 | chr1:24571603-24573471 REVERSE LENGTH=554 135 1e-32
AT3G06050.1 | chr3:1826311-1827809 REVERSE LENGTH=202 119 1e-27
>AT3G52960.1 | chr3:19639699-19640403 FORWARD LENGTH=235
Length = 234
Score = 270 bits (689), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 125/163 (76%), Positives = 145/163 (88%)
Query: 70 TIAVGDKLPDATLSYFDSPDGELKTVTVRDLTAGKKVVLFAVPGAFTPTCTQKHVPGFVA 129
+I+VGDKLPD+TLSY D G++KTVTV LTAGKK +LFAVPGAFTPTC+QKHVPGFV+
Sbjct: 72 SISVGDKLPDSTLSYLDPSTGDVKTVTVSSLTAGKKTILFAVPGAFTPTCSQKHVPGFVS 131
Query: 130 KAGELRAKGVDAVACVSVNDAFVMRAWKESLGVGDEVLLLSDGNGELARAMGVELDLSDK 189
KAGELR+KG+D +AC+SVNDAFVM AW++ LG+ DEV+LLSDGNGE +GVELDL DK
Sbjct: 132 KAGELRSKGIDVIACISVNDAFVMEAWRKDLGINDEVMLLSDGNGEFTGKLGVELDLRDK 191
Query: 190 PAGLGVRSRRYALLAEDGVVKVLNLEEGGAFTTSSAEEMLKAL 232
P GLGVRSRRYA+LA+DGVVKVLNLEEGGAFT SSAE+MLKAL
Sbjct: 192 PVGLGVRSRRYAILADDGVVKVLNLEEGGAFTNSSAEDMLKAL 234
>AT1G65980.1 | chr1:24559524-24560753 REVERSE LENGTH=163
Length = 162
Score = 191 bits (485), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 95/162 (58%), Positives = 121/162 (74%), Gaps = 3/162 (1%)
Query: 71 IAVGDKLPDATLSYFDSPDGELKTVTVRDLTAGKKVVLFAVPGAFTPTCTQKHVPGFVAK 130
IAVGD +PD T+S+FD D +L+T +V L AGKKV+LF VPGAFTPTC+ KHVPGF+ K
Sbjct: 4 IAVGDVVPDGTISFFDEND-QLQTASVHSLAAGKKVILFGVPGAFTPTCSMKHVPGFIEK 62
Query: 131 AGELRAKGVDAVACVSVNDAFVMRAWKESLGVGDEVLLLSDGNGELARAMGVELDLSDKP 190
A EL++KGVD + C SVND FVM+AW ++ V ++DG+GE +G+ELDL DK
Sbjct: 63 AEELKSKGVDEIICFSVNDPFVMKAWGKTYPENKHVKFVADGSGEYTHLLGLELDLKDK- 121
Query: 191 AGLGVRSRRYALLAEDGVVKVLNLEEGGAFTTSSAEEMLKAL 232
GLGVRSRR+ALL +D V V N+E GG FT SSA+++LKAL
Sbjct: 122 -GLGVRSRRFALLLDDLKVTVANVESGGEFTVSSADDILKAL 162
>AT1G60740.1 | chr1:22361127-22361817 FORWARD LENGTH=163
Length = 162
Score = 189 bits (481), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 91/162 (56%), Positives = 120/162 (74%), Gaps = 3/162 (1%)
Query: 71 IAVGDKLPDATLSYFDSPDGELKTVTVRDLTAGKKVVLFAVPGAFTPTCTQKHVPGFVAK 130
I VGD +PD T+S+FD D +L+TV+V + AGKKV+LF VPGAFTPTC+ HVPGF+ K
Sbjct: 4 ITVGDVVPDGTISFFDEND-QLQTVSVHSIAAGKKVILFGVPGAFTPTCSMSHVPGFIGK 62
Query: 131 AGELRAKGVDAVACVSVNDAFVMRAWKESLGVGDEVLLLSDGNGELARAMGVELDLSDKP 190
A EL++KG+D + C SVND FVM+AW ++ V ++DG+GE +G+ELDL DK
Sbjct: 63 AEELKSKGIDEIICFSVNDPFVMKAWGKTYQENKHVKFVADGSGEYTHLLGLELDLKDK- 121
Query: 191 AGLGVRSRRYALLAEDGVVKVLNLEEGGAFTTSSAEEMLKAL 232
GLG+RSRR+ALL ++ V V N+E GG FT SSAE++LKAL
Sbjct: 122 -GLGIRSRRFALLLDNLKVTVANVENGGEFTVSSAEDILKAL 162
>AT1G65970.1 | chr1:24557527-24558229 REVERSE LENGTH=163
Length = 162
Score = 188 bits (478), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 91/162 (56%), Positives = 120/162 (74%), Gaps = 3/162 (1%)
Query: 71 IAVGDKLPDATLSYFDSPDGELKTVTVRDLTAGKKVVLFAVPGAFTPTCTQKHVPGFVAK 130
I VGD +PD T+S+FD D +L+TV+V + AGKKV+LF VPGAFTPTC+ HVPGF+ K
Sbjct: 4 ITVGDVVPDGTISFFDEND-QLQTVSVHSIAAGKKVILFGVPGAFTPTCSMSHVPGFIGK 62
Query: 131 AGELRAKGVDAVACVSVNDAFVMRAWKESLGVGDEVLLLSDGNGELARAMGVELDLSDKP 190
A EL++KG+D + C SVND FVM+AW ++ V ++DG+GE +G+ELDL DK
Sbjct: 63 AEELKSKGIDEIICFSVNDPFVMKAWGKTYPENKHVKFVADGSGEYTHLLGLELDLKDK- 121
Query: 191 AGLGVRSRRYALLAEDGVVKVLNLEEGGAFTTSSAEEMLKAL 232
GLG+RSRR+ALL ++ V V N+E GG FT SSAE++LKAL
Sbjct: 122 -GLGIRSRRFALLLDNLKVTVANVESGGEFTVSSAEDILKAL 162
>AT1G65990.1 | chr1:24571603-24573471 REVERSE LENGTH=554
Length = 553
Score = 135 bits (341), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/148 (48%), Positives = 102/148 (68%), Gaps = 7/148 (4%)
Query: 71 IAVGDKLPDATLSYFDSPDGELKTVTVRDLTAGKKVVLFAVPGAFTPTCTQKHVPGFVAK 130
I VGD +PD ++S+FD D +L+TV+V L AGKKV+LF VPGAF PTC+ HV GF+ K
Sbjct: 4 IDVGDFVPDGSISFFDD-DDQLQTVSVHSLAAGKKVILFGVPGAFPPTCSMNHVNGFIEK 62
Query: 131 AGELRAKGVDAVACVSVNDAFVMRAWKESLGVGDEVLLLSDGNGELARAMGVELDLSDKP 190
A EL++ GVD + C+S +D F++ A E+ V + DG+GE + +G+EL++ DK
Sbjct: 63 AEELKSNGVDEIICLSGDDPFMITACSEN----KHVKFVEDGSGEYIQLLGLELEVKDK- 117
Query: 191 AGLGVRSRRYALLAEDGVVKVLNLEEGG 218
GLGVRSR +ALL ++ V V+N+ GG
Sbjct: 118 -GLGVRSRGFALLLDNLKVIVVNVGSGG 144
>AT3G06050.1 | chr3:1826311-1827809 REVERSE LENGTH=202
Length = 201
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 88/140 (62%), Gaps = 3/140 (2%)
Query: 91 ELKTVTVRDLTAGKKVVLFAVPGAFTPTCTQKHVPGFVAKAGELRAKGVDAVACVSVNDA 150
+ T + D+ GKKVV+F +PGA+T C+Q+HVP + + + +AKG+D+V CVSVND
Sbjct: 61 KFSTTPLSDIFKGKKVVIFGLPGAYTGVCSQQHVPSYKSHIDKFKAKGIDSVICVSVNDP 120
Query: 151 FVMRAWKESLGVGDEVLLLSDGNGELARAMGVELDLSDKPAGLGVRSRRYALLAEDGVVK 210
F + W E LG D + D +G+ +++G++ DLS A LG RS R++ EDG VK
Sbjct: 121 FAINGWAEKLGAKDAIEFYGDFDGKFHKSLGLDKDLS--AALLGPRSERWSAYVEDGKVK 178
Query: 211 VLNLEEGGA-FTTSSAEEML 229
+N+EE + F + AE +L
Sbjct: 179 AVNVEEAPSDFKVTGAEVIL 198
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.136 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,642,141
Number of extensions: 139910
Number of successful extensions: 295
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 285
Number of HSP's successfully gapped: 6
Length of query: 232
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 137
Effective length of database: 8,502,049
Effective search space: 1164780713
Effective search space used: 1164780713
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 110 (47.0 bits)