Os01g0675100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : peroxiredoxin [Oryza sativa (japonica cultivar-group)].
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Os01g0675100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : peroxiredoxin [Oryza sativa (japonica cultivar-group)].
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.46 | 0.284 | 15 | -1.39 | 0.848 | 0.88 | 0.07 | -1.6 | -0.49 | 11.9 | 22.84 | 1312 | -- | -- |
| 37.96 | 0.287 | 15 | -0.922 | 0.844 | 0.752 | 0.154 | -- | -0.367 | 11.9 | 22.21 | 1305 | -- | -- |
| 36.48 | 0.281 | 15 | -1.39 | 0.847 | 0.88 | -- | -1.61 | -0.492 | 11.9 | 22.8 | 1309 | -- | -- |
| 38.06 | 0.287 | 15 | -0.919 | 0.842 | 0.746 | -- | -- | -0.367 | 11.9 | 22.22 | 1313 | -- | -- |
| 61.28 | 0.367 | 15 | -1.12 | -- | 1.2 | -- | -1.44 | -0.45 | -- | 22.07 | 5920 | -- | -- |
| 57.21 | 0.355 | 14.9 | -0.667 | 0.758 | -- | 0.0845 | -- | -0.205 | 11.6 | -- | -- | -- | -- |
| 57.25 | 0.354 | 14.9 | -0.664 | 0.758 | -- | -- | -- | -0.205 | 11.6 | -- | -- | -- | -- |
| 59.55 | 0.361 | 15 | -0.941 | -- | 1.27 | -- | -- | -0.414 | -- | 18.24 | 5933 | -- | -- |
| 58.44 | 0.356 | 15 | -- | 0.83 | 0.522 | -- | -- | -0.221 | 11.9 | 22.75 | 1285 | -- | -- |
| 93.35 | 0.451 | 15 | -0.685 | -- | -- | -- | -- | -0.213 | -- | -- | -- | -- | -- |
| 68.85 | 0.388 | 14.9 | -- | 0.766 | -- | -- | -- | -0.131 | 11.7 | -- | -- | -- | -- |
| 81.77 | 0.423 | 15 | -- | -- | 1.05 | -- | -- | -0.279 | -- | 18.24 | 5933 | -- | -- |
| 105.72 | 0.48 | 14.9 | -- | -- | -- | -- | -- | -0.137 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.43 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 5 |
| 12 | 35.64 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 2 |
| 40 | 36.03 | radiation | 1 | 1440 | < th | dose dependent | sin | 16 | NA |
| 48 | 36.11 | radiation | 1 | 1440 | < th | dose dependent | rect. | 14 | 6 |
| 50 | 36.11 | radiation | 1 | 1440 | < th | dose dependent | rect. | 14 | 8 |
| 51 | 36.11 | radiation | 1 | 1440 | < th | dose dependent | rect. | 14 | 10 |
| 52 | 36.11 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 22 |
| 59 | 36.13 | radiation | 1 | 1440 | < th | dose dependent | rect. | 14 | 14 |
| 69 | 36.18 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 17 |
| 83 | 36.21 | temperature | 20 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 119 | 36.36 | radiation | 1 | 1440 | < th | dose independent | rect. | 14 | 16 |
| 121 | 36.37 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 22 |
| 135 | 36.40 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 14 |
| 136 | 36.40 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 16 |
| 139 | 36.41 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 12 |
| 149 | 36.43 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 19 |
| 195 | 36.55 | radiation | 1 | 1440 | > th | dose independent | rect. | 14 | 16 |
| 200 | 36.56 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 22 |
| 235 | 36.62 | temperature | 20 | 1440 | > th | dose dependent | sin | 20 | NA |
| 318 | 36.82 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 369 | 36.96 | radiation | 1 | 1440 | < th | dose independent | sin | 15 | NA |
| 435 | 37.11 | radiation | 1 | 1440 | > th | dose independent | sin | 15 | NA |
| 493 | 37.25 | radiation | 1 | 1440 | < th | dose independent | rect. | 14 | 6 |
| 494 | 37.25 | radiation | 1 | 1440 | < th | dose independent | rect. | 14 | 8 |
| 499 | 37.26 | radiation | 1 | 1440 | < th | dose independent | rect. | 14 | 10 |
| 533 | 37.30 | temperature | 25 | 1440 | > th | dose dependent | rect. | 23 | 20 |
| 537 | 37.32 | radiation | 1 | 1440 | > th | dose independent | rect. | 14 | 5 |
| 771 | 37.56 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 14 |
| 772 | 37.56 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 16 |
| 788 | 37.57 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 12 |
| 846 | 37.61 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 851 | 37.62 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 11 |
| 886 | 37.64 | wind | 5 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 892 | 37.64 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 4 |
| 948 | 37.70 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 965 | 37.72 | wind | 5 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 995 | 37.74 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 15 |
| 996 | 37.74 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 17 |