Os02g0192700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Thioredoxin peroxidase.
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Os02g0192700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Thioredoxin peroxidase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 264.23 | 0.764 | 13 | -1.84 | 1.17 | -2.04 | 0.772 | -0.911 | -1.64 | 16.3 | 55.19 | 1310 | -- | -- |
| 265.34 | 0.759 | 13 | -1.94 | 1.21 | -2.16 | 0.688 | -- | -1.66 | 16.1 | 55.04 | 1269 | -- | -- |
| 265.79 | 0.759 | 13 | -1.84 | 1.18 | -2.04 | -- | -0.768 | -1.64 | 16.3 | 55.38 | 1303 | -- | -- |
| 266.66 | 0.761 | 13 | -1.93 | 1.21 | -2.14 | -- | -- | -1.65 | 16.2 | 54.98 | 1272 | -- | -- |
| 293.01 | 0.797 | 13 | -1.82 | -- | -2.18 | -- | -0.437 | -1.62 | -- | 55.42 | 1770 | -- | -- |
| 364.22 | 0.895 | 13 | -1.84 | 0.945 | -- | 0.308 | -- | -1.55 | 17 | -- | -- | -- | -- |
| 364.46 | 0.894 | 13 | -1.84 | 0.947 | -- | -- | -- | -1.55 | 17.1 | -- | -- | -- | -- |
| 292.77 | 0.797 | 13 | -1.87 | -- | -2.31 | -- | -- | -1.71 | -- | 57.44 | 1779 | -- | -- |
| 346.71 | 0.867 | 13 | -- | 1.03 | -2.31 | -- | -- | -1.49 | 16.5 | 49.72 | 26818 | -- | -- |
| 411.51 | 0.948 | 13 | -1.87 | -- | -- | -- | -- | -1.57 | -- | -- | -- | -- | -- |
| 453.54 | 0.996 | 13 | -- | 0.98 | -- | -- | -- | -1.34 | 17 | -- | -- | -- | -- |
| 378.96 | 0.907 | 13 | -- | -- | -2.48 | -- | -- | -1.73 | -- | 21.87 | 26466 | -- | -- |
| 503.98 | 1.05 | 13 | -- | -- | -- | -- | -- | -1.36 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 255.68 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 8 | 13 |
| 3 | 256.47 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 8 | 13 |
| 5 | 256.73 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 4 |
| 6 | 256.79 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 10 | 12 |
| 29 | 258.44 | humidity | 60.0 | 1440 | > th | dose dependent | sin | 20 | NA |
| 36 | 258.83 | humidity | 80.0 | 1440 | > th | dose independent | sin | 22 | NA |
| 64 | 259.61 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 10 | 21 |
| 65 | 259.62 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 10 | 17 |
| 107 | 260.41 | humidity | 80.0 | 1440 | < th | dose independent | sin | 23 | NA |
| 109 | 260.43 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 115 | 260.52 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 116 | 260.52 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 2 |
| 183 | 261.76 | humidity | 70.0 | 1440 | > th | dose independent | sin | 19 | NA |
| 241 | 262.50 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 19 | 2 |
| 254 | 262.74 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 10 | 14 |
| 260 | 262.81 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 11 | 9 |
| 309 | 263.06 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 382 | 263.54 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 10 | 5 |
| 388 | 263.60 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 412 | 263.85 | humidity | 90.0 | 1440 | < th | dose dependent | sin | 19 | NA |
| 471 | 264.40 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 509 | 264.71 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 510 | 264.71 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 528 | 264.86 | humidity | 70.0 | 1440 | < th | dose independent | sin | 18 | NA |
| 698 | 265.51 | humidity | 70.0 | 1440 | > th | dose independent | no | NA | NA |
| 701 | 265.51 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 22 | 23 |
| 725 | 265.63 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 760 | 265.90 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 18 | 2 |
| 772 | 266.00 | humidity | 50.0 | 1440 | > th | dose dependent | no | NA | NA |
| 889 | 266.73 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 17 | 7 |
| 898 | 266.77 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 17 | 14 |
| 923 | 266.90 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 961 | 267.12 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 13 | 23 |