BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0192700 Os02g0192700|AK061629
(225 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0192700 Similar to Thioredoxin peroxidase 327 6e-90
Os06g0625500 Similar to Thioredoxin peroxidase 276 6e-75
Os01g0675100 peroxiredoxin [Oryza sativa (japonica cultivar... 174 5e-44
Os01g0266600 Redoxin domain containing protein 100 2e-21
Os01g0349300 92 2e-19
>Os02g0192700 Similar to Thioredoxin peroxidase
Length = 225
Score = 327 bits (837), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 168/206 (81%), Positives = 168/206 (81%)
Query: 20 GKRFITXXXXXXXXXRPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDKLPDATLSYFDP 79
GKRFIT RPL DKLPDATLSYFDP
Sbjct: 20 GKRFITSSFSLSFSSRPLATGVRAAGARAARRSAASASTVVATIAVGDKLPDATLSYFDP 79
Query: 80 ADGELKTVTVAELTAGRKAVLFAVPGAFTPTCSQKHLPGFIEKAGELHAKGVDAIACVSV 139
ADGELKTVTVAELTAGRKAVLFAVPGAFTPTCSQKHLPGFIEKAGELHAKGVDAIACVSV
Sbjct: 80 ADGELKTVTVAELTAGRKAVLFAVPGAFTPTCSQKHLPGFIEKAGELHAKGVDAIACVSV 139
Query: 140 NDAFVMRAWKESLGLGDADVLLLSDGNLELTRALGVEMDLSDKPMGLGVRSRRYALLADD 199
NDAFVMRAWKESLGLGDADVLLLSDGNLELTRALGVEMDLSDKPMGLGVRSRRYALLADD
Sbjct: 140 NDAFVMRAWKESLGLGDADVLLLSDGNLELTRALGVEMDLSDKPMGLGVRSRRYALLADD 199
Query: 200 GVVKVLNLEEGGAFTTSSAEEMLKAL 225
GVVKVLNLEEGGAFTTSSAEEMLKAL
Sbjct: 200 GVVKVLNLEEGGAFTTSSAEEMLKAL 225
>Os06g0625500 Similar to Thioredoxin peroxidase
Length = 232
Score = 276 bits (707), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 138/159 (86%), Positives = 149/159 (93%), Gaps = 1/159 (0%)
Query: 67 DKLPDATLSYFDPADGELKTVTVAELTAGRKAVLFAVPGAFTPTCSQKHLPGFIEKAGEL 126
DKLPDATLSYFD DGELKTVTV +LTAG+K VLFAVPGAFTPTC+QKH+PGF+ KAGEL
Sbjct: 75 DKLPDATLSYFDSPDGELKTVTVRDLTAGKKVVLFAVPGAFTPTCTQKHVPGFVAKAGEL 134
Query: 127 HAKGVDAIACVSVNDAFVMRAWKESLGLGDADVLLLSDGNLELTRALGVEMDLSDKPMGL 186
AKGVDA+ACVSVNDAFVMRAWKESLG+GD +VLLLSDGN EL RA+GVE+DLSDKP GL
Sbjct: 135 RAKGVDAVACVSVNDAFVMRAWKESLGVGD-EVLLLSDGNGELARAMGVELDLSDKPAGL 193
Query: 187 GVRSRRYALLADDGVVKVLNLEEGGAFTTSSAEEMLKAL 225
GVRSRRYALLA+DGVVKVLNLEEGGAFTTSSAEEMLKAL
Sbjct: 194 GVRSRRYALLAEDGVVKVLNLEEGGAFTTSSAEEMLKAL 232
>Os01g0675100 peroxiredoxin [Oryza sativa (japonica cultivar-group)]
Length = 162
Score = 174 bits (441), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 94/159 (59%), Positives = 116/159 (72%), Gaps = 4/159 (2%)
Query: 67 DKLPDATLSYFDPADGELKTVTVAELTAGRKAVLFAVPGAFTPTCSQKHLPGFIEKAGEL 126
D LPD L +FD D +L+ V+V L AG+K VLF VPGAFTPTCS +H+PGFI +A +L
Sbjct: 8 DTLPDGQLGWFDGED-KLQQVSVHGLAAGKKVVLFGVPGAFTPTCSNQHVPGFINQAEQL 66
Query: 127 HAKGVDAIACVSVNDAFVMRAWKESLGLGDADVLLLSDGNLELTRALGVEMDLSDKPMGL 186
AKGVD I VSVND FVM+AW +S + V L+DG T+ALG+E+DLS+K GL
Sbjct: 67 KAKGVDDILLVSVNDPFVMKAWAKSYP-ENKHVKFLADGLGTYTKALGLELDLSEK--GL 123
Query: 187 GVRSRRYALLADDGVVKVLNLEEGGAFTTSSAEEMLKAL 225
G+RSRR+ALLAD+ V V N+EEGG FT S AEE+LKAL
Sbjct: 124 GIRSRRFALLADNLKVTVANIEEGGQFTISGAEEILKAL 162
>Os01g0266600 Redoxin domain containing protein
Length = 198
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 80/144 (55%), Gaps = 4/144 (2%)
Query: 83 ELKTVTVAELTAGRKAVLFAVPGAFTPTCSQKHLPGFIEKAGELHAKGVDAIACVSVNDA 142
T + ++ G+K V+F +PGA+T CSQ H+P + +L AKGVD++ CVSVND
Sbjct: 58 NFSTTPLKDIFHGKKVVIFGLPGAYTGVCSQAHVPSYKNNIDKLKAKGVDSVICVSVNDP 117
Query: 143 FVMRAWKESLGLGDADVLLLSDGNLELTRALGVEMDLSDKPMGLGVRSRRYALLADDGVV 202
+ + W E L DA + D + ++L +E+DLS LG RS R++ DDG +
Sbjct: 118 YALNGWAEKLQAKDA-IEFYGDFDGSFHKSLDLEVDLS--AALLGRRSHRWSAFVDDGKI 174
Query: 203 KVLNLEEGGA-FTTSSAEEMLKAL 225
K N+E + F S AE +L +
Sbjct: 175 KAFNVEVAPSDFKVSGAEVILDQI 198
>Os01g0349300
Length = 106
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/67 (74%), Positives = 53/67 (79%)
Query: 159 VLLLSDGNLELTRALGVEMDLSDKPMGLGVRSRRYALLADDGVVKVLNLEEGGAFTTSSA 218
VLLLS N EL ALGVE+DL DKP G VRSR YA L +DGVVKVLNL+EG AFTTSS
Sbjct: 40 VLLLSHSNGELAHALGVELDLPDKPAGHDVRSRCYAFLVEDGVVKVLNLKEGVAFTTSSI 99
Query: 219 EEMLKAL 225
EEMLKAL
Sbjct: 100 EEMLKAL 106
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.136 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,684,590
Number of extensions: 221951
Number of successful extensions: 443
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 438
Number of HSP's successfully gapped: 5
Length of query: 225
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 128
Effective length of database: 11,971,043
Effective search space: 1532293504
Effective search space used: 1532293504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 154 (63.9 bits)