BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0596300 Os06g0596300|AK120303
(357 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0596300 Similar to Acyl-ACP thioesterase (Fragment) 633 0.0
Os11g0659500 Similar to Acyl-ACP thioesterase (Fragment) 429 e-120
Os06g0143400 Similar to Acyl-ACP thioesterase (Fragment) 425 e-119
Os02g0644700 Similar to Acyl-ACP thioesterase (Fragment) 368 e-102
Os01g0502300 207 1e-53
Os09g0505300 Similar to Br FatA1 189 4e-48
>Os06g0596300 Similar to Acyl-ACP thioesterase (Fragment)
Length = 357
Score = 633 bits (1633), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/342 (92%), Positives = 317/342 (92%)
Query: 1 MAGSIAASAFLPGSPAAAPPKSVLGERPDSLDVRGIAAKPGXXXXXXXLRAGKTRTHAAI 60
MAGSIAASAFLPGSPAAAPPKSVLGERPDSLDVRGIAAKPG LRAGKTRTHAAI
Sbjct: 1 MAGSIAASAFLPGSPAAAPPKSVLGERPDSLDVRGIAAKPGSSSSAAALRAGKTRTHAAI 60
Query: 61 PKVNGGSSALADPEHDTMXXXXXXAAPRTFYNQLPDWSMXXXXXXXXXXXXEKQWTLLDW 120
PKVNGGSSALADPEHDTM AAPRTFYNQLPDWSM EKQWTLLDW
Sbjct: 61 PKVNGGSSALADPEHDTMSSSSSSAAPRTFYNQLPDWSMLLAAITTIFLAAEKQWTLLDW 120
Query: 121 KPKRPDMLTDTFGFGRMIHEGLMFRQNFSIRSYEIGADRTASIETLMNHLQETALNHVKS 180
KPKRPDMLTDTFGFGRMIHEGLMFRQNFSIRSYEIGADRTASIETLMNHLQETALNHVKS
Sbjct: 121 KPKRPDMLTDTFGFGRMIHEGLMFRQNFSIRSYEIGADRTASIETLMNHLQETALNHVKS 180
Query: 181 AGLLGDGFGSTPEMSKRDLFWVVSQMQAIVERYPCWGDTVEVDTWVGAHGKNGMRRDWHI 240
AGLLGDGFGSTPEMSKRDLFWVVSQMQAIVERYPCWGDTVEVDTWVGAHGKNGMRRDWHI
Sbjct: 181 AGLLGDGFGSTPEMSKRDLFWVVSQMQAIVERYPCWGDTVEVDTWVGAHGKNGMRRDWHI 240
Query: 241 RDSVTGHTILKATSKWVMMHKLTRRLARIPDEVRTEIEPYFFEHASIVDEDNQKLPKLPD 300
RDSVTGHTILKATSKWVMMHKLTRRLARIPDEVRTEIEPYFFEHASIVDEDNQKLPKLPD
Sbjct: 241 RDSVTGHTILKATSKWVMMHKLTRRLARIPDEVRTEIEPYFFEHASIVDEDNQKLPKLPD 300
Query: 301 IEGANVAKYVRTGLTPRWADLDINQHVNNVKYIGWILEVKKV 342
IEGANVAKYVRTGLTPRWADLDINQHVNNVKYIGWILEVKKV
Sbjct: 301 IEGANVAKYVRTGLTPRWADLDINQHVNNVKYIGWILEVKKV 342
>Os11g0659500 Similar to Acyl-ACP thioesterase (Fragment)
Length = 425
Score = 429 bits (1104), Expect = e-120, Method: Compositional matrix adjust.
Identities = 212/346 (61%), Positives = 256/346 (73%), Gaps = 13/346 (3%)
Query: 1 MAGSIAASAFLPG-------SPAAAPPKSVLGERPDSLDVRGIAAKPGXXXXXXXLRAGK 53
MAGS+AASAF PG S ++ +V GE P++L VRGI AKP ++A
Sbjct: 1 MAGSLAASAFFPGPGSSPAASARSSKNAAVTGELPENLSVRGIVAKPNPPPAAMQVKA-- 58
Query: 54 TRTHAAIPKVNGGSSALADPEHDTMXXXXXXAAPRTFYNQLPDWSMXXXXXXXXXXXXEK 113
+PKVNG L + D M +AP+TFYNQLPDWSM EK
Sbjct: 59 --QAQTLPKVNGTKVNLKTVKPD-MEETVPYSAPKTFYNQLPDWSMLLAAITTIFLAAEK 115
Query: 114 QWTLLDWKPKRPDMLTDTFGFGRMIHEGLMFRQNFSIRSYEIGADRTASIETLMNHLQET 173
QWTLLDWKPK+PDML DTFGFGR+I +G++FRQNF IRSYEIGADRTASIETLMNHLQET
Sbjct: 116 QWTLLDWKPKKPDMLVDTFGFGRIIQDGMVFRQNFMIRSYEIGADRTASIETLMNHLQET 175
Query: 174 ALNHVKSAGLLGDGFGSTPEMSKRDLFWVVSQMQAIVERYPCWGDTVEVDTWVGAHGKNG 233
ALNHV++AGLLGDGFG+TPEMSKR+L WVVS++Q +VE+YP WGDTV+VDTWV A GKNG
Sbjct: 176 ALNHVRTAGLLGDGFGATPEMSKRNLIWVVSKIQLLVEQYPAWGDTVQVDTWVAAAGKNG 235
Query: 234 MRRDWHIRDSVTGHTILKATSKWVMMHKLTRRLARIPDEVRTEIEPYFFEHASIVDEDNQ 293
MRRDWH+RD +G TIL+ATS WVMMHK TRRL+++PDEVR EI PYF + ++I +E ++
Sbjct: 236 MRRDWHVRDYNSGRTILRATSVWVMMHKKTRRLSKMPDEVRAEIGPYFNDRSAITEEQSE 295
Query: 294 KLPKLPDIEGANVA-KYVRTGLTPRWADLDINQHVNNVKYIGWILE 338
KL K + G + +++R GLTPRW DLD+NQHVNNVKYIGWILE
Sbjct: 296 KLAKTGNKVGDDATEQFIRKGLTPRWGDLDVNQHVNNVKYIGWILE 341
>Os06g0143400 Similar to Acyl-ACP thioesterase (Fragment)
Length = 427
Score = 425 bits (1092), Expect = e-119, Method: Compositional matrix adjust.
Identities = 213/344 (61%), Positives = 251/344 (72%), Gaps = 11/344 (3%)
Query: 1 MAGSIAASAFLP-----GSPAAAPPKSVLGERPDSLDVRGIAAKPGXXXXXXXLRAGKTR 55
MAGS+AASAF P + +A K+ GE P++L VRGI AKP ++A
Sbjct: 1 MAGSLAASAFFPVPGSSPAASARSSKNTTGELPENLSVRGIVAKPNPSPGAMQVKA---- 56
Query: 56 THAAIPKVNGGSSALADPEHDTMXXXXXXAAPRTFYNQLPDWSMXXXXXXXXXXXXEKQW 115
A+PKVNG L D AP+TFYNQLPDWSM EKQW
Sbjct: 57 QAQALPKVNGTKVNLKTTSPDK-EDIIPYTAPKTFYNQLPDWSMLLAAVTTIFLAAEKQW 115
Query: 116 TLLDWKPKRPDMLTDTFGFGRMIHEGLMFRQNFSIRSYEIGADRTASIETLMNHLQETAL 175
TLLDWKPK+PDML DTFGFGR+I +GL+FRQNF IRSYEIGADRTASIETLMNHLQETAL
Sbjct: 116 TLLDWKPKKPDMLADTFGFGRIIQDGLVFRQNFLIRSYEIGADRTASIETLMNHLQETAL 175
Query: 176 NHVKSAGLLGDGFGSTPEMSKRDLFWVVSQMQAIVERYPCWGDTVEVDTWVGAHGKNGMR 235
NHVK+AGLLGDGFG+TPEMSKR+L WVVS++Q +VERYP WGD V+VDTWV A GKNGMR
Sbjct: 176 NHVKTAGLLGDGFGATPEMSKRNLIWVVSKIQLLVERYPSWGDMVQVDTWVAAAGKNGMR 235
Query: 236 RDWHIRDSVTGHTILKATSKWVMMHKLTRRLARIPDEVRTEIEPYFFEHASIVDEDNQKL 295
RDWH+RD +G TIL+ATS WVMM+K TRRL+++PDEVR EI PYF ++I +E +KL
Sbjct: 236 RDWHVRDYNSGQTILRATSVWVMMNKNTRRLSKMPDEVRAEIGPYFNGRSAISEEQGEKL 295
Query: 296 PKL-PDIEGANVAKYVRTGLTPRWADLDINQHVNNVKYIGWILE 338
PK +GA ++ R GLTP+W+DLD+NQHVNNVKYIGWILE
Sbjct: 296 PKPGTTFDGAATKQFTRKGLTPKWSDLDVNQHVNNVKYIGWILE 339
>Os02g0644700 Similar to Acyl-ACP thioesterase (Fragment)
Length = 298
Score = 368 bits (944), Expect = e-102, Method: Compositional matrix adjust.
Identities = 183/302 (60%), Positives = 221/302 (73%), Gaps = 12/302 (3%)
Query: 1 MAGSIAASAFLPG-------SPAAAPPKSVLGERPDSLDVRGIAAKPGXXXXXXXLRAGK 53
MAGS+AASAF PG S ++ +V GE P++L V GI AKP ++A
Sbjct: 1 MAGSLAASAFFPGPGSSPAASARSSKNAAVTGELPENLSVCGIVAKPNPPPAAMQVKA-- 58
Query: 54 TRTHAAIPKVNGGSSALADPEHDTMXXXXXXAAPRTFYNQLPDWSMXXXXXXXXXXXXEK 113
+PKVNG L + D M +AP+TFYNQLPDWSM EK
Sbjct: 59 --QAQTLPKVNGTKVNLKTVKPD-MEETVPHSAPKTFYNQLPDWSMLLAAITTIFLAAEK 115
Query: 114 QWTLLDWKPKRPDMLTDTFGFGRMIHEGLMFRQNFSIRSYEIGADRTASIETLMNHLQET 173
QWTLLDWKPK+PDML DTFGFGR+I +G++FRQNF IRSYEIGADRTASIETLMNHLQET
Sbjct: 116 QWTLLDWKPKKPDMLVDTFGFGRIIQDGMVFRQNFMIRSYEIGADRTASIETLMNHLQET 175
Query: 174 ALNHVKSAGLLGDGFGSTPEMSKRDLFWVVSQMQAIVERYPCWGDTVEVDTWVGAHGKNG 233
ALNHV++AGLLGDGFG+TPEMSKR+L WVVS++Q +VE+YP WGD V+VDTWV A GKNG
Sbjct: 176 ALNHVRTAGLLGDGFGATPEMSKRNLIWVVSKIQLLVEQYPAWGDMVQVDTWVAAAGKNG 235
Query: 234 MRRDWHIRDSVTGHTILKATSKWVMMHKLTRRLARIPDEVRTEIEPYFFEHASIVDEDNQ 293
MRRDWH+RD +G TIL+ATS WVMMHK TRRL+++PDEVR EI PYF + ++I +E ++
Sbjct: 236 MRRDWHVRDYNSGRTILRATSVWVMMHKKTRRLSKMPDEVRAEIGPYFNDRSAITEEQSE 295
Query: 294 KL 295
KL
Sbjct: 296 KL 297
>Os01g0502300
Length = 437
Score = 207 bits (527), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 107/243 (44%), Positives = 146/243 (60%), Gaps = 38/243 (15%)
Query: 129 TDTFGFGRMIHEGLMFRQNFSIRSYEIGADRTASIETLMNHLQETALNHVKSAGLLGDGF 188
D F ++ G+ +RQ +RSYE+G DRTA++ET++N LQETALNHV +GLLGDGF
Sbjct: 89 VDPFRQAVIVEGGVRYRQTVVVRSYEVGPDRTATLETVLNLLQETALNHVWMSGLLGDGF 148
Query: 189 GSTPEMSKRDLFWVVSQMQAIVERYPCW-------------------------------- 216
G+T M +L WVVS+M V+ YP W
Sbjct: 149 GATHAMITNNLIWVVSRMHVQVDHYPIWYIILVFVFVHGVLFVQRGRGKKIYAHQTEVGC 208
Query: 217 -GDTVEVDTWVGAHGKNGMRRDWHIRDSVTGHTILKATSKWVMMHKLTRRLARIPDEVRT 275
G+ +E+DTWVG+ GKNGMRRDW +R +G ++ATS WVMM+K+TRRL+++P EVR
Sbjct: 209 RGEVLEIDTWVGSSGKNGMRRDWLVRGRSSGAIFVRATSTWVMMNKVTRRLSKMPKEVRD 268
Query: 276 EIEPYFFEHASIVDEDNQKLPKLPDIEGANVAKYVRTGLTPRWADLDINQHVNNVKYIGW 335
EI P+F + +I + K+ KL A YV + L P+ +DLD+N HVNNVKY+ W
Sbjct: 269 EISPWFIDRHAIDEVATDKIIKLD-----TNATYVDSDLKPKRSDLDMNHHVNNVKYVRW 323
Query: 336 ILE 338
+LE
Sbjct: 324 MLE 326
>Os09g0505300 Similar to Br FatA1
Length = 276
Score = 189 bits (479), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 93/198 (46%), Positives = 127/198 (64%), Gaps = 12/198 (6%)
Query: 147 NFSIRSYEIGADRTASIETLMNHLQETALNHVKSAGLLGDGFGSTPEMSKRDLFWVVSQM 206
+F +R YE+G ++TA++ET+ N LQE NH +S G DGF +T M K L WV ++M
Sbjct: 1 SFIVRCYEVGINKTATVETIANLLQEVGCNHAQSVGFSTDGFATTTTMRKLGLIWVTNRM 60
Query: 207 QAIVERYPCWGDTVEVDTWVGAHGKNGMRRDWHIRDSVTGHTILKATSKWVMMHKLTRRL 266
+ +YP WGD VE++TW GK G RRDW ++D G I +ATSKWVMM++ TRRL
Sbjct: 61 HIEIYKYPAWGDVVEIETWCQEDGKIGTRRDWILKDLANGEVIGRATSKWVMMNQNTRRL 120
Query: 267 ARIPDEVRTEIEPYFFEHA------SIVDEDNQKLPKLPDIEGANVAKYVRTGLTPRWAD 320
R+ D+VR E+ F H + +E+N L K+P + + A++ R GL PR AD
Sbjct: 121 QRVSDDVRDEV----FVHCPKTPRLAFPEENNGSLKKIPVL--TDPAQHSRLGLVPRRAD 174
Query: 321 LDINQHVNNVKYIGWILE 338
LD+NQHVNNV YIGW+LE
Sbjct: 175 LDMNQHVNNVTYIGWVLE 192
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.134 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,873,331
Number of extensions: 472573
Number of successful extensions: 1049
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1040
Number of HSP's successfully gapped: 7
Length of query: 357
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 255
Effective length of database: 11,709,973
Effective search space: 2986043115
Effective search space used: 2986043115
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)