BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0590500 Os06g0590500|AK107080
(308 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0590500 Similar to Syntaxin 121 (AtSYP121) (Syntaxin-r... 576 e-165
Os02g0209900 Syntaxin/epimorphin family protein 439 e-123
Os03g0787000 Similar to Syntaxin 306 2e-83
Os07g0164300 Syntaxin/epimorphin family protein 251 4e-67
Os06g0168500 Similar to Syntaxin-like protein (Fragment) 247 7e-66
Os07g0528900 Similar to Syntaxin 132 (AtSYP132) 213 2e-55
Os12g0192300 76 3e-14
>Os06g0590500 Similar to Syntaxin 121 (AtSYP121) (Syntaxin-related protein
At-Syr1)
Length = 308
Score = 576 bits (1484), Expect = e-165, Method: Compositional matrix adjust.
Identities = 287/308 (93%), Positives = 287/308 (93%)
Query: 1 MNDLFSSSSFKKYADASPASGVGGSDMEAGGEGVVNLDRFFEDVEGVKEDMKGLEALYKR 60
MNDLFSSSSFKKYADASPASGVGGSDMEAGGEGVVNLDRFFEDVEGVKEDMKGLEALYKR
Sbjct: 1 MNDLFSSSSFKKYADASPASGVGGSDMEAGGEGVVNLDRFFEDVEGVKEDMKGLEALYKR 60
Query: 61 LQSTNEETKTAHDARAVKALRSRMDGDVEQVLRRAKAVKGKLEALDRDNATSRKVPGCGP 120
LQSTNEETKTAHDARAVKALRSRMDGDVEQVLRRAKAVKGKLEALDRDNATSRKVPGCGP
Sbjct: 61 LQSTNEETKTAHDARAVKALRSRMDGDVEQVLRRAKAVKGKLEALDRDNATSRKVPGCGP 120
Query: 121 GSSTDRTRTSVVAGLGKKLKDIMDDFQGLRTRMAAEYKETVARRYYTVTGEKAEDSTIDS 180
GSSTDRTRTSVVAGLGKKLKDIMDDFQGLRTRMAAEYKETVARRYYTVTGEKAEDSTIDS
Sbjct: 121 GSSTDRTRTSVVAGLGKKLKDIMDDFQGLRTRMAAEYKETVARRYYTVTGEKAEDSTIDS 180
Query: 181 LIESGESESFLQKAIQEQGRGQVMDTISEIQERHDAVKDIERSLLDLHQVFLDMAALVEA 240
LIESGESESFLQKAIQEQGRGQVMDTISEIQERHDAVKDIERSLLDLHQVFLDMAALVEA
Sbjct: 181 LIESGESESFLQKAIQEQGRGQVMDTISEIQERHDAVKDIERSLLDLHQVFLDMAALVEA 240
Query: 241 QGHQLNDIESHVAHASSFVRRGTVELEVAREHQKSSRKWXXXXXXXXXXXXXXXXXXXXX 300
QGHQLNDIESHVAHASSFVRRGTVELEVAREHQKSSRKW
Sbjct: 241 QGHQLNDIESHVAHASSFVRRGTVELEVAREHQKSSRKWACVAVLAGIILIAVLILPVLI 300
Query: 301 NLRILTLR 308
NLRILTLR
Sbjct: 301 NLRILTLR 308
>Os02g0209900 Syntaxin/epimorphin family protein
Length = 311
Score = 439 bits (1129), Expect = e-123, Method: Compositional matrix adjust.
Identities = 223/313 (71%), Positives = 260/313 (83%), Gaps = 7/313 (2%)
Query: 1 MNDLFSSSSFKKYADASPASGVGGSDMEAGGEGV-----VNLDRFFEDVEGVKEDMKGLE 55
MNDLFSS SFKKYAD + + DME+GG G NL++FFE+VEGVK +M+GLE
Sbjct: 1 MNDLFSSGSFKKYADLKNQAAL--DDMESGGGGGGGGEGANLEQFFEEVEGVKGEMRGLE 58
Query: 56 ALYKRLQSTNEETKTAHDARAVKALRSRMDGDVEQVLRRAKAVKGKLEALDRDNATSRKV 115
AL+ RLQ+++E +KTAHDARAV++LR+RMD DVEQVLRRA+AVKG+L+ALDR NA SRK+
Sbjct: 59 ALHGRLQASHEGSKTAHDARAVRSLRARMDADVEQVLRRARAVKGRLQALDRANAASRKL 118
Query: 116 PGCGPGSSTDRTRTSVVAGLGKKLKDIMDDFQGLRTRMAAEYKETVARRYYTVTGEKAED 175
PG GPGSSTDRTR+S+V+GLG KLKD+MDDFQGLR+RMA EYKETVARRYYTVTGEKAE+
Sbjct: 119 PGRGPGSSTDRTRSSIVSGLGTKLKDLMDDFQGLRSRMAEEYKETVARRYYTVTGEKAEE 178
Query: 176 STIDSLIESGESESFLQKAIQEQGRGQVMDTISEIQERHDAVKDIERSLLDLHQVFLDMA 235
ST+++LI SGESE+FLQKAIQEQGRGQV+DTISEIQERHDAVK+IER LLDLHQVFLDMA
Sbjct: 179 STVEALISSGESETFLQKAIQEQGRGQVLDTISEIQERHDAVKEIERGLLDLHQVFLDMA 238
Query: 236 ALVEAQGHQLNDIESHVAHASSFVRRGTVELEVAREHQKSSRKWXXXXXXXXXXXXXXXX 295
ALVEAQGHQLNDIESHVA A+SFVRRG VELE ARE+Q+SSRKW
Sbjct: 239 ALVEAQGHQLNDIESHVARANSFVRRGAVELETAREYQRSSRKWACIAILAGVVLVVIIV 298
Query: 296 XXXXXNLRILTLR 308
NL +LT+R
Sbjct: 299 LPIIVNLHLLTIR 311
>Os03g0787000 Similar to Syntaxin
Length = 330
Score = 306 bits (783), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 154/244 (63%), Positives = 197/244 (80%)
Query: 36 NLDRFFEDVEGVKEDMKGLEALYKRLQSTNEETKTAHDARAVKALRSRMDGDVEQVLRRA 95
+LDRFFEDVE +K++++ LE + + L NE K+ HDA AV+ALR+RMD DV +++A
Sbjct: 41 SLDRFFEDVESIKDELRDLERIQRSLHDANEGGKSLHDAAAVRALRARMDADVAAAIKKA 100
Query: 96 KAVKGKLEALDRDNATSRKVPGCGPGSSTDRTRTSVVAGLGKKLKDIMDDFQGLRTRMAA 155
K VK +LE+LDR NA +R VPGCGPGSSTDRTRTSVVAGL KKL+D M+ F LR R+++
Sbjct: 101 KVVKLRLESLDRANAANRSVPGCGPGSSTDRTRTSVVAGLRKKLRDSMESFSSLRARISS 160
Query: 156 EYKETVARRYYTVTGEKAEDSTIDSLIESGESESFLQKAIQEQGRGQVMDTISEIQERHD 215
EY+ETVARRYYTVTGE+ +++T+D+L E+GE E FLQ+AI EQGRG+V+ ++EIQERH
Sbjct: 161 EYRETVARRYYTVTGEQPDEATLDNLAETGEGERFLQRAIAEQGRGEVLGVVAEIQERHG 220
Query: 216 AVKDIERSLLDLHQVFLDMAALVEAQGHQLNDIESHVAHASSFVRRGTVELEVAREHQKS 275
AV ++ERSLL+LHQVF DMA LV AQG QL+DIE+HV A SFV RG +L VAR+HQKS
Sbjct: 221 AVAELERSLLELHQVFNDMAVLVAAQGEQLDDIETHVGRARSFVDRGREQLVVARKHQKS 280
Query: 276 SRKW 279
+RKW
Sbjct: 281 TRKW 284
>Os07g0164300 Syntaxin/epimorphin family protein
Length = 336
Score = 251 bits (642), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 125/281 (44%), Positives = 194/281 (69%), Gaps = 7/281 (2%)
Query: 1 MNDLFSSSSFKKYADASPASGVGGSDMEAG--GEGVVNLDRFFEDVEGVKEDMKGLEALY 58
MN+L + S F+ S G D+E G + NL F + V+ ++ + L L
Sbjct: 34 MNNLLTDS-FELPRGGSSRDG----DIEMGMQADPSDNLKGFLKKVDAIESLIAKLTNLL 88
Query: 59 KRLQSTNEETKTAHDARAVKALRSRMDGDVEQVLRRAKAVKGKLEALDRDNATSRKVPGC 118
+LQ+ NEE+K AR +KA++ RM+ D+++V + A+ K K++ L++DN ++R+ PGC
Sbjct: 89 HKLQTANEESKAVTKARDMKAIKQRMEKDIDEVGKIARMAKTKVDELEKDNLSNRQKPGC 148
Query: 119 GPGSSTDRTRTSVVAGLGKKLKDIMDDFQGLRTRMAAEYKETVARRYYTVTGEKAEDSTI 178
G GS+ DR+R + KKLK+ MDDFQ LR + EY++ V RR +TVTG + ++ T+
Sbjct: 149 GKGSAVDRSREQTTGAVKKKLKERMDDFQVLREAIRQEYRDVVERRVFTVTGSRPDEETV 208
Query: 179 DSLIESGESESFLQKAIQEQGRGQVMDTISEIQERHDAVKDIERSLLDLHQVFLDMAALV 238
D+LIE+G SE Q+AIQ+QGRGQ++DT++EIQERHDAV+D+ER LL+L Q+F+DMA LV
Sbjct: 209 DNLIETGRSEQIFQEAIQQQGRGQILDTVAEIQERHDAVRDLERKLLELQQIFMDMAVLV 268
Query: 239 EAQGHQLNDIESHVAHASSFVRRGTVELEVAREHQKSSRKW 279
+AQG +N+IE+HV++A++ +++G L+ A++ QK+SRKW
Sbjct: 269 DAQGDMINNIETHVSNATNHIQQGVSALQNAKKLQKNSRKW 309
>Os06g0168500 Similar to Syntaxin-like protein (Fragment)
Length = 305
Score = 247 bits (631), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 130/285 (45%), Positives = 192/285 (67%), Gaps = 10/285 (3%)
Query: 1 MNDLFSSSSFKKYADASPASGVGGSDMEAGGEGVVN------LDRFFEDVEGVKEDMKGL 54
M +L + S D +PA+ D+E G +G ++ + FFE V +++ + L
Sbjct: 1 MRNLLTDSFELSKVDQAPAN----VDIELGLQGGMSSSAQPGFEGFFEQVREIEKLHETL 56
Query: 55 EALYKRLQSTNEETKTAHDARAVKALRSRMDGDVEQVLRRAKAVKGKLEALDRDNATSRK 114
L K LQ++NEE+K A A+K ++ RM+ DV +V + A+ K K+E L++DNA +R+
Sbjct: 57 TKLLKDLQNSNEESKIVTKASAMKEIKKRMEKDVNEVTKTARLAKSKVEKLNKDNAANRE 116
Query: 115 VPGCGPGSSTDRTRTSVVAGLGKKLKDIMDDFQGLRTRMAAEYKETVARRYYTVTGEKAE 174
PG G GS DR+RT+ L K+L++ + +FQ LR + EY++ V RR +TVTGE+A+
Sbjct: 117 KPGFGKGSGVDRSRTTTTVSLTKRLRERISEFQTLREAIQKEYRDVVERRVFTVTGERAD 176
Query: 175 DSTIDSLIESGESESFLQKAIQEQGRGQVMDTISEIQERHDAVKDIERSLLDLHQVFLDM 234
+ TID LIE+G+SE Q+AIQEQGRG+V+DT+ EIQERHDAVK+IE+ LL+L Q+FLDM
Sbjct: 177 EETIDKLIETGDSEQIFQRAIQEQGRGRVLDTLQEIQERHDAVKEIEQKLLELQQIFLDM 236
Query: 235 AALVEAQGHQLNDIESHVAHASSFVRRGTVELEVAREHQKSSRKW 279
+ LVEAQG L++IES V+ A+ ++ GT L+ AR QK++RKW
Sbjct: 237 SVLVEAQGEILDNIESQVSGAAEHIQTGTNLLQKARFLQKNTRKW 281
>Os07g0528900 Similar to Syntaxin 132 (AtSYP132)
Length = 303
Score = 213 bits (541), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 113/258 (43%), Positives = 163/258 (63%), Gaps = 9/258 (3%)
Query: 26 DMEAGGEGVVN-----LDRFFEDVEGVKEDMKGLEALYKRLQSTNEETKTAHDARAVKAL 80
D+E G + N L+ FF++V+ ++ + + + +LQ NEE+K+ A +KA+
Sbjct: 14 DIEMGYQNSKNKSDYGLEDFFQEVQEIETLLDKMSNINHKLQEANEESKSVTKASEMKAI 73
Query: 81 RSRMDGDVEQVLRRAKAVKGKLEALDRDNATSRKVPGCGPGSSTDRTRTSVVAGLGKKLK 140
RM+ D+ +V + + +K KLE +DR+N +RK GC G+ DR+R + L KLK
Sbjct: 74 NKRMEKDINEVGKITRTIKVKLEEMDRNNLENRKKQGCEKGTGVDRSRIA----LKNKLK 129
Query: 141 DIMDDFQGLRTRMAAEYKETVARRYYTVTGEKAEDSTIDSLIESGESESFLQKAIQEQGR 200
+ M +FQ LR + EY++ VAR +TVTGE+ D ID LIE+G SE +KAIQ GR
Sbjct: 130 ERMKNFQNLRQIIQDEYRQGVARMVFTVTGEQPSDQVIDHLIETGSSEQIFEKAIQGIGR 189
Query: 201 GQVMDTISEIQERHDAVKDIERSLLDLHQVFLDMAALVEAQGHQLNDIESHVAHASSFVR 260
GQ++ T+ EI ERHD V +IE+ LL+L Q+F DMA LV+AQG LNDIE+ V +A ++
Sbjct: 190 GQIIATVKEIHERHDVVMEIEKKLLELQQIFADMATLVDAQGETLNDIENQVQNAVDHIQ 249
Query: 261 RGTVELEVAREHQKSSRK 278
RGT EL A+ QK SRK
Sbjct: 250 RGTGELRTAKRLQKKSRK 267
>Os12g0192300
Length = 321
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 105/215 (48%), Gaps = 29/215 (13%)
Query: 37 LDRFFEDVEGVKEDMKGLEALYKRLQSTNEETKTAHDARAVKALRSRMDGDVEQVLRRAK 96
L+ F + E K++M L RLQ+ +E +K A R+ + +++ A
Sbjct: 60 LEAFLREAEAAKDEMAALRDELSRLQAAHEASKALLRP---GAPRAATQAALVRLIGSAG 116
Query: 97 AVKGKLEALDRDNATSRKVPGCGPGSSTDRTRTSVVAGLGKKLKDIMDDFQGLRTRMAAE 156
++ +L ++DR T+ AGL +L+D+ Q LR +++AE
Sbjct: 117 RLRARLASMDRRAPAP--------------ATTAATAGLRGRLQDLTAGVQVLRRQVSAE 162
Query: 157 YKETVARRYYTVTGEKAEDSTIDSLIESGESESFLQKAIQEQGRGQVMDTISEIQERHDA 216
+ AR Y V GE + +D L+ +G + + + A++ M + SE +E
Sbjct: 163 RRGDAARCYLAVAGEAPTEEQLDRLVAAGGANTDAEAAVRA-----AMKSSSEAEE---- 213
Query: 217 VKDIERSLLDLHQVFLDMAALVEAQGHQLNDIESH 251
+E LL+L Q+FLDMAALVE+QG +++DIE H
Sbjct: 214 ---VEGGLLELQQLFLDMAALVESQGARVDDIERH 245
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.129 0.347
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,760,449
Number of extensions: 348682
Number of successful extensions: 1147
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1142
Number of HSP's successfully gapped: 7
Length of query: 308
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 207
Effective length of database: 11,762,187
Effective search space: 2434772709
Effective search space used: 2434772709
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 156 (64.7 bits)