Os06g0168500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Syntaxin-like protein (Fragment).
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Os06g0168500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Syntaxin-like protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 143.6 | 0.563 | 11.9 | 2.24 | 2.09 | 0.729 | 1.32 | -1.26 | 0.895 | 20.2 | 27.48 | 1433 | -- | -- |
| 147.1 | 0.565 | 12 | 2.18 | 2.07 | 0.755 | 1.38 | -- | 0.833 | 20.2 | 27.32 | 1478 | -- | -- |
| 148.9 | 0.568 | 11.9 | 2.23 | 2.09 | 0.72 | -- | -1.37 | 0.899 | 20.3 | 28.13 | 1419 | -- | -- |
| 152.26 | 0.575 | 12 | 2.04 | 2.05 | 0.721 | -- | -- | 0.834 | 20.1 | 26.89 | 1496 | -- | -- |
| 304.86 | 0.818 | 11.9 | 1.89 | -- | 1.01 | -- | 0.431 | 0.652 | -- | 6.75 | 1542 | -- | -- |
| 164 | 0.6 | 12 | 1.96 | 2.08 | -- | 1.29 | -- | 0.652 | 20.2 | -- | -- | -- | -- |
| 169.04 | 0.609 | 12 | 1.92 | 2.08 | -- | -- | -- | 0.653 | 20.2 | -- | -- | -- | -- |
| 305.99 | 0.818 | 11.9 | 1.88 | -- | 1.01 | -- | -- | 0.652 | -- | 6.75 | 1542 | -- | -- |
| 249.19 | 0.735 | 12 | -- | 2.11 | 0.864 | -- | -- | 0.747 | 20.2 | 40 | 8742 | -- | -- |
| 407.83 | 0.944 | 11.9 | 1.91 | -- | -- | -- | -- | 0.629 | -- | -- | -- | -- | -- |
| 266.69 | 0.764 | 12 | -- | 2.07 | -- | -- | -- | 0.439 | 20.2 | -- | -- | -- | -- |
| 399.01 | 0.933 | 12 | -- | -- | 1.04 | -- | -- | 0.423 | -- | 10 | 1548 | -- | -- |
| 503.89 | 1.05 | 12 | -- | -- | -- | -- | -- | 0.417 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 130.95 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 12 | 18 |
| 3 | 131.89 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 6 |
| 5 | 132.83 | temperature | 15 | 270 | > th | dose dependent | rect. | 4 | 6 |
| 6 | 133.00 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 23 | 16 |
| 7 | 133.01 | humidity | 80 | 10 | > th | dose dependent | rect. | 24 | 18 |
| 9 | 133.05 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 9 | 21 |
| 10 | 133.09 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 11 | 17 |
| 14 | 133.34 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 8 |
| 15 | 133.38 | humidity | 80 | 10 | > th | dose dependent | rect. | 1 | 15 |
| 23 | 133.73 | humidity | 60 | 10 | > th | dose dependent | rect. | 1 | 16 |
| 45 | 134.58 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 12 | 20 |
| 52 | 134.70 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 1 | 17 |
| 74 | 135.28 | temperature | 20 | 270 | > th | dose independent | rect. | 4 | 7 |
| 75 | 135.30 | humidity | 90 | 10 | < th | dose independent | rect. | 6 | 6 |
| 85 | 135.53 | temperature | 25 | 30 | > th | dose independent | rect. | 21 | 15 |
| 87 | 135.55 | temperature | 15 | 270 | > th | dose dependent | rect. | 5 | 4 |
| 90 | 135.65 | humidity | 90 | 30 | < th | dose independent | rect. | 2 | 10 |
| 99 | 135.77 | temperature | 25 | 10 | > th | dose dependent | sin | 8 | NA |
| 106 | 135.89 | radiation | 20 | 30 | < th | dose dependent | rect. | 1 | 16 |
| 118 | 136.11 | temperature | 25 | 30 | > th | dose independent | sin | 6 | NA |
| 134 | 136.41 | temperature | 25 | 30 | > th | dose independent | rect. | 23 | 13 |
| 135 | 136.41 | radiation | 20 | 30 | < th | dose dependent | rect. | 1 | 13 |
| 138 | 136.48 | radiation | 20 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 144 | 136.56 | radiation | 1 | 270 | < th | dose dependent | rect. | 22 | 17 |
| 146 | 136.62 | radiation | 1 | 270 | < th | dose independent | rect. | 22 | 17 |
| 147 | 136.63 | temperature | 25 | 30 | < th | dose independent | rect. | 24 | 16 |
| 158 | 136.80 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 22 | 7 |
| 160 | 136.80 | humidity | 90 | 30 | > th | dose independent | rect. | 24 | 18 |
| 162 | 136.81 | temperature | 25 | 30 | > th | dose independent | rect. | 5 | 7 |
| 173 | 136.88 | radiation | 20 | 30 | < th | dose dependent | sin | 6 | NA |
| 212 | 137.31 | humidity | 90 | 30 | > th | dose independent | rect. | 24 | 14 |
| 218 | 137.34 | humidity | 90 | 30 | < th | dose independent | rect. | 18 | 18 |
| 224 | 137.39 | temperature | 20 | 270 | > th | dose independent | rect. | 6 | 3 |
| 237 | 137.49 | temperature | 25 | 30 | > th | dose independent | rect. | 18 | 18 |
| 263 | 137.67 | temperature | 25 | 30 | > th | dose independent | rect. | 1 | 11 |
| 308 | 138.01 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 16 |
| 328 | 138.20 | humidity | 90 | 30 | < th | dose independent | rect. | 23 | 13 |
| 330 | 138.24 | temperature | 25 | 30 | < th | dose independent | sin | 6 | NA |
| 340 | 138.32 | humidity | 80 | 10 | > th | dose dependent | sin | 4 | NA |
| 343 | 138.33 | temperature | 10 | 10 | > th | dose dependent | rect. | 6 | 19 |
| 344 | 138.34 | humidity | 90 | 30 | < th | dose independent | sin | 5 | NA |
| 381 | 138.62 | radiation | 1 | 30 | > th | dose dependent | sin | 9 | NA |
| 413 | 138.90 | radiation | 40 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 439 | 139.05 | radiation | 30 | 1440 | < th | dose dependent | rect. | 10 | 4 |
| 445 | 139.09 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 9 |
| 456 | 139.13 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 470 | 139.23 | radiation | 20 | 30 | < th | dose dependent | rect. | 1 | 11 |
| 476 | 139.26 | radiation | 10 | 270 | < th | dose dependent | sin | 10 | NA |
| 490 | 139.33 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 494 | 139.37 | radiation | 1 | 270 | > th | dose independent | sin | 9 | NA |
| 503 | 139.41 | wind | 7 | 10 | < th | dose independent | rect. | 6 | 6 |
| 507 | 139.43 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 15 |
| 527 | 139.55 | radiation | 1 | 270 | > th | dose independent | rect. | 18 | 15 |
| 566 | 139.75 | temperature | 25 | 30 | < th | dose independent | rect. | 24 | 10 |
| 571 | 139.76 | radiation | 1 | 270 | > th | dose independent | rect. | 4 | 5 |
| 588 | 139.82 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 1 | 5 |
| 597 | 139.86 | radiation | 1 | 270 | < th | dose independent | sin | 9 | NA |
| 649 | 140.11 | radiation | 20 | 1440 | < th | dose dependent | rect. | 9 | 13 |
| 659 | 140.13 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 1 | 7 |
| 674 | 140.15 | radiation | 20 | 1440 | < th | dose dependent | rect. | 9 | 20 |
| 719 | 140.27 | temperature | 10 | 270 | > th | dose dependent | rect. | 18 | 16 |
| 808 | 140.57 | temperature | 25 | 90 | > th | dose dependent | rect. | 21 | 14 |
| 835 | 140.65 | radiation | 10 | 1440 | < th | dose dependent | sin | 22 | NA |
| 864 | 140.70 | humidity | 90 | 270 | < th | dose independent | rect. | 6 | 3 |
| 877 | 140.73 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 9 | 23 |
| 906 | 140.80 | radiation | 20 | 30 | < th | dose dependent | rect. | 1 | 9 |
| 918 | 140.85 | temperature | 20 | 10 | > th | dose dependent | rect. | 19 | 17 |
| 941 | 140.90 | radiation | 20 | 1440 | < th | dose independent | rect. | 10 | 9 |
| 945 | 140.90 | humidity | 90 | 10 | < th | dose dependent | sin | 8 | NA |
| 949 | 140.92 | radiation | 20 | 1440 | < th | dose independent | rect. | 10 | 12 |
| 950 | 140.92 | radiation | 20 | 1440 | < th | dose independent | rect. | 10 | 19 |