BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0168500 Os06g0168500|AK100316
(305 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0168500 Similar to Syntaxin-like protein (Fragment) 546 e-155
Os07g0164300 Syntaxin/epimorphin family protein 333 1e-91
Os07g0528900 Similar to Syntaxin 132 (AtSYP132) 266 2e-71
Os06g0590500 Similar to Syntaxin 121 (AtSYP121) (Syntaxin-r... 243 9e-65
Os02g0209900 Syntaxin/epimorphin family protein 226 2e-59
Os03g0787000 Similar to Syntaxin 210 1e-54
>Os06g0168500 Similar to Syntaxin-like protein (Fragment)
Length = 305
Score = 546 bits (1406), Expect = e-155, Method: Compositional matrix adjust.
Identities = 276/305 (90%), Positives = 276/305 (90%)
Query: 1 MRNLLTDSFELSKVDQAPANVDIELGLQGGMSSSAQPGFEGFFEQVRXXXXXXXXXXXXX 60
MRNLLTDSFELSKVDQAPANVDIELGLQGGMSSSAQPGFEGFFEQVR
Sbjct: 1 MRNLLTDSFELSKVDQAPANVDIELGLQGGMSSSAQPGFEGFFEQVREIEKLHETLTKLL 60
Query: 61 XXXQNSNEESKIVTKASAMKEIKKRMEKDVNEVTKTARLAKSKVEKLNKDNAANREKPGF 120
QNSNEESKIVTKASAMKEIKKRMEKDVNEVTKTARLAKSKVEKLNKDNAANREKPGF
Sbjct: 61 KDLQNSNEESKIVTKASAMKEIKKRMEKDVNEVTKTARLAKSKVEKLNKDNAANREKPGF 120
Query: 121 GKGSGVDRSRTTTTVSLTKRLRERISEFQTLREAIQKEYRDVVERRVFTVTGERADEETI 180
GKGSGVDRSRTTTTVSLTKRLRERISEFQTLREAIQKEYRDVVERRVFTVTGERADEETI
Sbjct: 121 GKGSGVDRSRTTTTVSLTKRLRERISEFQTLREAIQKEYRDVVERRVFTVTGERADEETI 180
Query: 181 DKLIETGDSEQIFQRAIQEQGRGRVLDTLQEIQERHDAVKEIEQKLLELQQIFLDMSVLV 240
DKLIETGDSEQIFQRAIQEQGRGRVLDTLQEIQERHDAVKEIEQKLLELQQIFLDMSVLV
Sbjct: 181 DKLIETGDSEQIFQRAIQEQGRGRVLDTLQEIQERHDAVKEIEQKLLELQQIFLDMSVLV 240
Query: 241 EAQGEILDNIESQVSGAAEHIQTGTNLLQKARFLQKNTRKWTCIGXXXXXXXXXXXXXSL 300
EAQGEILDNIESQVSGAAEHIQTGTNLLQKARFLQKNTRKWTCIG SL
Sbjct: 241 EAQGEILDNIESQVSGAAEHIQTGTNLLQKARFLQKNTRKWTCIGIVILLIIILIVVLSL 300
Query: 301 KPWSK 305
KPWSK
Sbjct: 301 KPWSK 305
>Os07g0164300 Syntaxin/epimorphin family protein
Length = 336
Score = 333 bits (854), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 168/283 (59%), Positives = 215/283 (75%), Gaps = 5/283 (1%)
Query: 1 MRNLLTDSFELSKVDQAPANVDIELGLQGGMSSSAQPGFEGFFEQVRXXXXXXXXXXXXX 60
M NLLTDSFEL + + + DIE+G+Q S + +GF ++V
Sbjct: 34 MNNLLTDSFELPR-GGSSRDGDIEMGMQADPSDN----LKGFLKKVDAIESLIAKLTNLL 88
Query: 61 XXXQNSNEESKIVTKASAMKEIKKRMEKDVNEVTKTARLAKSKVEKLNKDNAANREKPGF 120
Q +NEESK VTKA MK IK+RMEKD++EV K AR+AK+KV++L KDN +NR+KPG
Sbjct: 89 HKLQTANEESKAVTKARDMKAIKQRMEKDIDEVGKIARMAKTKVDELEKDNLSNRQKPGC 148
Query: 121 GKGSGVDRSRTTTTVSLTKRLRERISEFQTLREAIQKEYRDVVERRVFTVTGERADEETI 180
GKGS VDRSR TT ++ K+L+ER+ +FQ LREAI++EYRDVVERRVFTVTG R DEET+
Sbjct: 149 GKGSAVDRSREQTTGAVKKKLKERMDDFQVLREAIRQEYRDVVERRVFTVTGSRPDEETV 208
Query: 181 DKLIETGDSEQIFQRAIQEQGRGRVLDTLQEIQERHDAVKEIEQKLLELQQIFLDMSVLV 240
D LIETG SEQIFQ AIQ+QGRG++LDT+ EIQERHDAV+++E+KLLELQQIF+DM+VLV
Sbjct: 209 DNLIETGRSEQIFQEAIQQQGRGQILDTVAEIQERHDAVRDLERKLLELQQIFMDMAVLV 268
Query: 241 EAQGEILDNIESQVSGAAEHIQTGTNLLQKARFLQKNTRKWTC 283
+AQG++++NIE+ VS A HIQ G + LQ A+ LQKN+RKW C
Sbjct: 269 DAQGDMINNIETHVSNATNHIQQGVSALQNAKKLQKNSRKWMC 311
>Os07g0528900 Similar to Syntaxin 132 (AtSYP132)
Length = 303
Score = 266 bits (679), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 152/305 (49%), Positives = 196/305 (64%), Gaps = 14/305 (4%)
Query: 1 MRNLLTDSFELSKVDQAPANVDIELGLQGGMSSSAQPGFEGFFEQVRXXXXXXXXXXXXX 60
M NLLT+SFE + DIE+G Q + S G E FF++V+
Sbjct: 1 MNNLLTNSFESER--------DIEMGYQNSKNKS-DYGLEDFFQEVQEIETLLDKMSNIN 51
Query: 61 XXXQNSNEESKIVTKASAMKEIKKRMEKDVNEVTKTARLAKSKVEKLNKDNAANREKPGF 120
Q +NEESK VTKAS MK I KRMEKD+NEV K R K K+E+++++N NR+K G
Sbjct: 52 HKLQEANEESKSVTKASEMKAINKRMEKDINEVGKITRTIKVKLEEMDRNNLENRKKQGC 111
Query: 121 GKGSGVDRSRTTTTVSLTKRLRERISEFQTLREAIQKEYRDVVERRVFTVTGERADEETI 180
KG+GVDRSR ++L +L+ER+ FQ LR+ IQ EYR V R VFTVTGE+ ++ I
Sbjct: 112 EKGTGVDRSR----IALKNKLKERMKNFQNLRQIIQDEYRQGVARMVFTVTGEQPSDQVI 167
Query: 181 DKLIETGDSEQIFQRAIQEQGRGRVLDTLQEIQERHDAVKEIEQKLLELQQIFLDMSVLV 240
D LIETG SEQIF++AIQ GRG+++ T++EI ERHD V EIE+KLLELQQIF DM+ LV
Sbjct: 168 DHLIETGSSEQIFEKAIQGIGRGQIIATVKEIHERHDVVMEIEKKLLELQQIFADMATLV 227
Query: 241 EAQGEILDNIESQVSGAAEHIQTGTNLLQKARFLQKNTRKWTCIGXXXXXXXXXXXXXS- 299
+AQGE L++IE+QV A +HIQ GT L+ A+ LQK +RK I S
Sbjct: 228 DAQGETLNDIENQVQNAVDHIQRGTGELRTAKRLQKKSRKCMFIAIIILLVIAAIVVLSI 287
Query: 300 LKPWS 304
LKPW+
Sbjct: 288 LKPWA 292
>Os06g0590500 Similar to Syntaxin 121 (AtSYP121) (Syntaxin-related protein
At-Syr1)
Length = 308
Score = 243 bits (621), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 127/289 (43%), Positives = 186/289 (64%), Gaps = 10/289 (3%)
Query: 1 MRNLLTDSFELSKVDQAPAN----VDIELGLQGGMSSSAQPGFEGFFEQVRXXXXXXXXX 56
M +L + S D +PA+ D+E G +G ++ + FFE V
Sbjct: 1 MNDLFSSSSFKKYADASPASGVGGSDMEAGGEGVVN------LDRFFEDVEGVKEDMKGL 54
Query: 57 XXXXXXXQNSNEESKIVTKASAMKEIKKRMEKDVNEVTKTARLAKSKVEKLNKDNAANRE 116
Q++NEE+K A A+K ++ RM+ DV +V + A+ K K+E L++DNA +R+
Sbjct: 55 EALYKRLQSTNEETKTAHDARAVKALRSRMDGDVEQVLRRAKAVKGKLEALDRDNATSRK 114
Query: 117 KPGFGKGSGVDRSRTTTTVSLTKRLRERISEFQTLREAIQKEYRDVVERRVFTVTGERAD 176
PG G GS DR+RT+ L K+L++ + +FQ LR + EY++ V RR +TVTGE+A+
Sbjct: 115 VPGCGPGSSTDRTRTSVVAGLGKKLKDIMDDFQGLRTRMAAEYKETVARRYYTVTGEKAE 174
Query: 177 EETIDKLIETGDSEQIFQRAIQEQGRGRVLDTLQEIQERHDAVKEIEQKLLELQQIFLDM 236
+ TID LIE+G+SE Q+AIQEQGRG+V+DT+ EIQERHDAVK+IE+ LL+L Q+FLDM
Sbjct: 175 DSTIDSLIESGESESFLQKAIQEQGRGQVMDTISEIQERHDAVKDIERSLLDLHQVFLDM 234
Query: 237 SVLVEAQGEILDNIESQVSGAAEHIQTGTNLLQKARFLQKNTRKWTCIG 285
+ LVEAQG L++IES V+ A+ ++ GT L+ AR QK++RKW C+
Sbjct: 235 AALVEAQGHQLNDIESHVAHASSFVRRGTVELEVAREHQKSSRKWACVA 283
>Os02g0209900 Syntaxin/epimorphin family protein
Length = 311
Score = 226 bits (576), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 113/247 (45%), Positives = 164/247 (66%)
Query: 39 FEGFFEQVRXXXXXXXXXXXXXXXXQNSNEESKIVTKASAMKEIKKRMEKDVNEVTKTAR 98
E FFE+V Q S+E SK A A++ ++ RM+ DV +V + AR
Sbjct: 40 LEQFFEEVEGVKGEMRGLEALHGRLQASHEGSKTAHDARAVRSLRARMDADVEQVLRRAR 99
Query: 99 LAKSKVEKLNKDNAANREKPGFGKGSGVDRSRTTTTVSLTKRLRERISEFQTLREAIQKE 158
K +++ L++ NAA+R+ PG G GS DR+R++ L +L++ + +FQ LR + +E
Sbjct: 100 AVKGRLQALDRANAASRKLPGRGPGSSTDRTRSSIVSGLGTKLKDLMDDFQGLRSRMAEE 159
Query: 159 YRDVVERRVFTVTGERADEETIDKLIETGDSEQIFQRAIQEQGRGRVLDTLQEIQERHDA 218
Y++ V RR +TVTGE+A+E T++ LI +G+SE Q+AIQEQGRG+VLDT+ EIQERHDA
Sbjct: 160 YKETVARRYYTVTGEKAEESTVEALISSGESETFLQKAIQEQGRGQVLDTISEIQERHDA 219
Query: 219 VKEIEQKLLELQQIFLDMSVLVEAQGEILDNIESQVSGAAEHIQTGTNLLQKARFLQKNT 278
VKEIE+ LL+L Q+FLDM+ LVEAQG L++IES V+ A ++ G L+ AR Q+++
Sbjct: 220 VKEIERGLLDLHQVFLDMAALVEAQGHQLNDIESHVARANSFVRRGAVELETAREYQRSS 279
Query: 279 RKWTCIG 285
RKW CI
Sbjct: 280 RKWACIA 286
>Os03g0787000 Similar to Syntaxin
Length = 330
Score = 210 bits (534), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 115/244 (47%), Positives = 151/244 (61%)
Query: 42 FFEQVRXXXXXXXXXXXXXXXXQNSNEESKIVTKASAMKEIKKRMEKDVNEVTKTARLAK 101
FFE V ++NE K + A+A++ ++ RM+ DV K A++ K
Sbjct: 45 FFEDVESIKDELRDLERIQRSLHDANEGGKSLHDAAAVRALRARMDADVAAAIKKAKVVK 104
Query: 102 SKVEKLNKDNAANREKPGFGKGSGVDRSRTTTTVSLTKRLRERISEFQTLREAIQKEYRD 161
++E L++ NAANR PG G GS DR+RT+ L K+LR+ + F +LR I EYR+
Sbjct: 105 LRLESLDRANAANRSVPGCGPGSSTDRTRTSVVAGLRKKLRDSMESFSSLRARISSEYRE 164
Query: 162 VVERRVFTVTGERADEETIDKLIETGDSEQIFQRAIQEQGRGRVLDTLQEIQERHDAVKE 221
V RR +TVTGE+ DE T+D L ETG+ E+ QRAI EQGRG VL + EIQERH AV E
Sbjct: 165 TVARRYYTVTGEQPDEATLDNLAETGEGERFLQRAIAEQGRGEVLGVVAEIQERHGAVAE 224
Query: 222 IEQKLLELQQIFLDMSVLVEAQGEILDNIESQVSGAAEHIQTGTNLLQKARFLQKNTRKW 281
+E+ LLEL Q+F DM+VLV AQGE LD+IE+ V A + G L AR QK+TRKW
Sbjct: 225 LERSLLELHQVFNDMAVLVAAQGEQLDDIETHVGRARSFVDRGREQLVVARKHQKSTRKW 284
Query: 282 TCIG 285
TCI
Sbjct: 285 TCIA 288
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.128 0.340
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,674,778
Number of extensions: 264698
Number of successful extensions: 995
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 989
Number of HSP's successfully gapped: 7
Length of query: 305
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 205
Effective length of database: 11,814,401
Effective search space: 2421952205
Effective search space used: 2421952205
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 156 (64.7 bits)