Os03g0787000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Syntaxin.
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Os03g0787000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Syntaxin.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 151.05 | 0.577 | 8.28 | 0.519 | 1.35 | 0.952 | -0.291 | -0.328 | 0.125 | 2.44 | 20.5 | 393 | -- | -- |
| 151.34 | 0.573 | 8.27 | 0.578 | 1.34 | 0.984 | -0.238 | -- | 0.138 | 2.46 | 20.6 | 412 | -- | -- |
| 151.33 | 0.573 | 8.27 | 0.536 | 1.34 | 0.958 | -- | -0.268 | 0.129 | 2.42 | 20.5 | 406 | -- | -- |
| 151.55 | 0.573 | 8.27 | 0.583 | 1.34 | 0.986 | -- | -- | 0.137 | 2.44 | 20.59 | 412 | -- | -- |
| 234.44 | 0.713 | 8.28 | 0.38 | -- | 1.16 | -- | -0.185 | 0.00594 | -- | 21.39 | 976 | -- | -- |
| 182.8 | 0.634 | 8.22 | 0.903 | 1.27 | -- | -0.195 | -- | 0.347 | 2.15 | -- | -- | -- | -- |
| 182.94 | 0.633 | 8.22 | 0.909 | 1.27 | -- | -- | -- | 0.348 | 2.12 | -- | -- | -- | -- |
| 234.21 | 0.713 | 8.28 | 0.512 | -- | 1.16 | -- | -- | 0.0562 | -- | 21.36 | 966 | -- | -- |
| 159.69 | 0.589 | 8.28 | -- | 1.35 | 1.15 | -- | -- | 0.073 | 2.54 | 20.4 | 422 | -- | -- |
| 279.52 | 0.781 | 8.21 | 0.962 | -- | -- | -- | -- | 0.378 | -- | -- | -- | -- | -- |
| 204.71 | 0.669 | 8.25 | -- | 1.29 | -- | -- | -- | 0.247 | 2.14 | -- | -- | -- | -- |
| 240.32 | 0.722 | 8.3 | -- | -- | 1.3 | -- | -- | -0.0313 | -- | 21.2 | 970 | -- | -- |
| 303.93 | 0.814 | 8.24 | -- | -- | -- | -- | -- | 0.271 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 138.03 | temperature | 20 | 270 | > th | dose independent | rect. | 15 | 16 |
| 7 | 139.59 | temperature | 20 | 270 | > th | dose independent | rect. | 11 | 21 |
| 27 | 143.62 | temperature | 20 | 90 | < th | dose independent | rect. | 15 | 13 |
| 29 | 143.75 | temperature | 20 | 90 | < th | dose independent | rect. | 12 | 16 |
| 39 | 144.39 | temperature | 20 | 270 | > th | dose independent | sin | 14 | NA |
| 42 | 144.46 | temperature | 20 | 10 | > th | dose independent | rect. | 17 | 16 |
| 43 | 144.47 | temperature | 20 | 90 | < th | dose independent | rect. | 17 | 11 |
| 63 | 145.38 | temperature | 20 | 90 | < th | dose independent | rect. | 19 | 9 |
| 68 | 145.52 | temperature | 20 | 90 | < th | dose independent | sin | 13 | NA |
| 113 | 146.56 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 7 |
| 162 | 147.55 | temperature | 20 | 720 | > th | dose independent | rect. | 10 | 17 |
| 183 | 147.84 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 9 |
| 226 | 148.62 | temperature | 20 | 270 | < th | dose independent | rect. | 6 | 21 |
| 255 | 149.00 | temperature | 20 | 270 | < th | dose independent | rect. | 12 | 21 |
| 351 | 149.92 | temperature | 20 | 10 | < th | dose independent | rect. | 14 | 20 |
| 353 | 149.95 | temperature | 20 | 270 | < th | dose independent | rect. | 22 | 3 |
| 432 | 150.36 | radiation | 10 | 4320 | < th | dose dependent | rect. | 24 | 5 |
| 436 | 150.41 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 480 | 150.72 | temperature | 20 | 10 | < th | dose independent | rect. | 12 | 22 |
| 499 | 150.82 | temperature | 20 | 10 | < th | dose dependent | rect. | 12 | 17 |
| 513 | 150.87 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 23 |
| 531 | 150.94 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 6 |
| 622 | 151.34 | radiation | 10 | 4320 | < th | dose dependent | rect. | 22 | 7 |
| 660 | 151.56 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 10 |
| 683 | 151.67 | temperature | 20 | 10 | < th | dose dependent | rect. | 12 | 23 |
| 698 | 151.75 | temperature | 20 | 10 | < th | dose dependent | rect. | 15 | 20 |
| 722 | 151.85 | temperature | 20 | 10 | > th | dose independent | rect. | 17 | 23 |
| 729 | 151.89 | temperature | 20 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 737 | 151.94 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 14 |
| 747 | 151.97 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 14 |
| 765 | 152.04 | temperature | 20 | 1440 | < th | dose independent | sin | 12 | NA |
| 772 | 152.05 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 15 |
| 897 | 152.45 | temperature | 20 | 10 | > th | dose independent | rect. | 12 | 23 |
| 931 | 152.57 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 3 |