Os07g0164300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Syntaxin/epimorphin family protein.
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Os07g0164300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Syntaxin/epimorphin family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.77 | 0.304 | 10.4 | -0.677 | 1.61 | 0.684 | -0.962 | -1.58 | -0.172 | 13.1 | 19.05 | 1361 | -- | -- |
| 43.99 | 0.309 | 10.4 | -0.516 | 1.55 | 0.773 | -1.07 | -- | -0.232 | 13 | 15.69 | 9329 | -- | -- |
| 44.92 | 0.312 | 10.4 | -0.658 | 1.55 | 0.727 | -- | -1.47 | -0.161 | 13.1 | 17.61 | 1634 | -- | -- |
| 46.13 | 0.316 | 10.3 | -0.467 | 1.59 | 0.757 | -- | -- | -0.152 | 13.2 | 15.39 | 8260 | -- | -- |
| 122.4 | 0.518 | 10.4 | -0.897 | -- | 2.09 | -- | -2.49 | -0.365 | -- | 17.61 | 1634 | -- | -- |
| 54.71 | 0.347 | 10.3 | -0.00332 | 1.55 | -- | -0.905 | -- | 0.0924 | 13.1 | -- | -- | -- | -- |
| 58.12 | 0.357 | 10.3 | -0.0354 | 1.55 | -- | -- | -- | 0.0876 | 13.1 | -- | -- | -- | -- |
| 128.97 | 0.531 | 10.4 | -0.497 | -- | 2.01 | -- | -- | -0.252 | -- | 17.61 | 1634 | -- | -- |
| 50.19 | 0.33 | 10.3 | -- | 1.58 | 0.522 | -- | -- | -0.0523 | 13.1 | 16.53 | 8023 | -- | -- |
| 208.07 | 0.674 | 10.3 | -0.0948 | -- | -- | -- | -- | 0.0567 | -- | -- | -- | -- | -- |
| 58.15 | 0.357 | 10.3 | -- | 1.56 | -- | -- | -- | 0.0916 | 13.1 | -- | -- | -- | -- |
| 135.16 | 0.543 | 10.4 | -- | -- | 1.88 | -- | -- | -0.18 | -- | 17.61 | 1634 | -- | -- |
| 208.31 | 0.674 | 10.3 | -- | -- | -- | -- | -- | 0.0672 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.30 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 5 |
| 2 | 39.31 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 3 | 39.33 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 7 |
| 6 | 39.37 | radiation | 10 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 19 | 39.41 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 15 |
| 21 | 39.48 | radiation | 30 | 14400 | > th | dose dependent | rect. | 16 | 16 |
| 24 | 39.52 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 13 |
| 29 | 39.65 | radiation | 30 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 31 | 40.05 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 35 | 40.32 | wind | 1 | 43200 | > th | dose dependent | rect. | 9 | 5 |
| 37 | 40.36 | wind | 3 | 43200 | > th | dose dependent | rect. | 8 | 8 |
| 39 | 40.38 | wind | 9 | 43200 | < th | dose dependent | rect. | 9 | 5 |
| 41 | 40.40 | radiation | 30 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 57 | 40.41 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 12 |
| 68 | 40.46 | radiation | 30 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 87 | 40.48 | wind | 5 | 43200 | > th | dose dependent | rect. | 24 | 17 |
| 97 | 40.54 | wind | 3 | 43200 | < th | dose independent | rect. | 9 | 3 |
| 100 | 40.56 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 12 |
| 108 | 40.58 | wind | 5 | 43200 | > th | dose independent | rect. | 6 | 11 |
| 111 | 40.58 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 3 |
| 115 | 40.59 | wind | 3 | 43200 | > th | dose independent | rect. | 9 | 5 |
| 123 | 40.60 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 11 |
| 132 | 40.62 | wind | 3 | 43200 | > th | dose dependent | sin | 0 | NA |
| 136 | 40.63 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 152 | 40.64 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 7 |
| 154 | 40.64 | wind | 3 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 165 | 40.65 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 186 | 40.67 | wind | 5 | 43200 | < th | dose dependent | rect. | 9 | 3 |
| 197 | 40.70 | radiation | 30 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 205 | 40.71 | wind | 7 | 43200 | < th | dose independent | rect. | 23 | 17 |
| 228 | 40.73 | wind | 5 | 43200 | < th | dose independent | sin | 0 | NA |
| 241 | 40.74 | wind | 5 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 249 | 40.75 | temperature | 20 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 253 | 40.76 | wind | 7 | 43200 | > th | dose independent | rect. | 23 | 17 |
| 264 | 40.77 | wind | 5 | 43200 | > th | dose independent | sin | 0 | NA |
| 286 | 40.79 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 317 | 40.81 | radiation | 30 | 14400 | < th | dose independent | rect. | 19 | 13 |
| 329 | 40.82 | radiation | 30 | 14400 | < th | dose independent | rect. | 4 | 4 |
| 352 | 40.83 | wind | 3 | 43200 | > th | dose dependent | rect. | 8 | 15 |
| 359 | 40.84 | wind | 7 | 43200 | < th | dose independent | sin | 4 | NA |
| 375 | 40.84 | wind | 3 | 43200 | > th | dose dependent | rect. | 19 | 22 |
| 376 | 40.85 | wind | 7 | 43200 | > th | dose independent | sin | 4 | NA |
| 378 | 40.85 | radiation | 30 | 14400 | < th | dose independent | rect. | 22 | 10 |
| 417 | 40.86 | wind | 7 | 43200 | > th | dose dependent | rect. | 9 | 5 |
| 430 | 40.87 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 21 |
| 450 | 40.87 | wind | 3 | 43200 | > th | dose dependent | rect. | 9 | 21 |
| 453 | 40.88 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 19 |
| 496 | 40.90 | wind | 3 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 502 | 40.90 | wind | 1 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 522 | 40.91 | wind | 3 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 543 | 40.92 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 18 |
| 568 | 40.93 | wind | 9 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 594 | 40.94 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 20 |
| 682 | 40.98 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 683 | 40.98 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 5 |
| 686 | 40.98 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 881 | 41.04 | wind | 3 | 43200 | > th | dose dependent | no | NA | NA |
| 931 | 41.06 | wind | 5 | 43200 | < th | dose independent | rect. | 19 | 23 |
| 957 | 41.07 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 22 |