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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0590500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Syntaxin 121 (AtSYP121) (Syntaxin-related protein At-Syr1).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.39 (0.0207) R2 : 0.00272
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0486 (0.0436) R2dN8 : 0.00351 R2N8 : 0.00272
σ : 0.39
deviance : 69.77
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
60.82 0.366 3.36 0.185 0.209 -1.5 0.228 8.03 -0.0288 8.77 49.24 233 -- --
61.39 0.365 3.38 0.107 0.169 1.64 0.293 -- -0.0205 10.3 46.94 186 -- --
60.92 0.364 3.36 0.185 0.216 -1.66 -- 8.44 -0.0292 8.17 48.84 216 -- --
61.01 0.364 3.38 0.104 0.219 1.91 -- -- -0.0278 8.04 46.81 176 -- --
63.25 0.37 3.36 0.227 -- -1.94 -- 8.95 -0.0261 -- 49.75 216 -- --
66.07 0.381 3.38 0.161 0.2 -- 0.37 -- -0.0301 9.94 -- -- -- --
66.37 0.381 3.38 0.173 0.215 -- -- -- -0.0311 8.73 -- -- -- --
63.74 0.372 3.38 0.102 -- 1.87 -- -- -0.0232 -- 46.33 176 -- --
61.25 0.365 3.38 -- 0.225 1.97 -- -- -0.0358 8 46.78 176 -- --
68.98 0.388 3.39 0.173 -- -- -- -- -0.0294 -- -- -- -- --
67.15 0.383 3.38 -- 0.215 -- -- -- -0.0503 8.67 -- -- -- --
64.01 0.373 3.39 -- -- 1.94 -- -- -0.034 -- 46.3 175 -- --
69.77 0.39 3.39 -- -- -- -- -- -0.0486 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 58.84 wind 1.0 10 < th dose dependent rect. 14 4
5 59.04 wind 1.0 30 < th dose independent rect. 14 2
7 59.04 wind 1.0 30 < th dose dependent rect. 14 2
13 59.32 atmosphere 1005.0 10 > th dose dependent rect. 2 2
20 60.15 radiation 1.0 43200 < th dose dependent rect. 3 1
21 60.16 humidity 50.0 270 > th dose independent rect. 8 23
23 60.24 humidity 50.0 270 > th dose independent sin 17 NA
24 60.33 radiation 10.0 10 > th dose independent rect. 12 22
34 60.58 humidity 60.0 270 < th dose dependent rect. 11 4
35 60.59 atmosphere 1000.0 30 > th dose independent rect. 3 23
36 60.61 radiation 20.0 30 < th dose dependent rect. 3 23
43 60.71 atmosphere 1005.0 90 > th dose independent rect. 2 1
56 60.88 humidity 50.0 30 > th dose independent rect. 3 23
58 60.90 temperature 25.0 90 > th dose independent rect. 1 1
63 60.90 radiation 10.0 10 < th dose independent rect. 3 23
66 60.93 wind 3.0 90 < th dose independent rect. 2 1
70 60.96 atmosphere 1010.0 30 < th dose dependent rect. 2 1
71 60.97 humidity 90.0 90 < th dose independent rect. 2 1
77 60.98 temperature 25.0 90 > th dose dependent rect. 1 1
79 61.00 humidity 50.0 270 < th dose independent sin 19 NA
80 61.00 humidity 50.0 270 < th dose independent rect. 12 23
82 61.00 humidity 50.0 270 < th dose dependent sin 20 NA
85 61.00 humidity 50.0 270 < th dose dependent rect. 11 7
104 61.01 humidity 50.0 270 < th dose independent rect. 11 7
123 61.01 humidity 50.0 270 < th dose dependent rect. 17 23
125 61.02 humidity 50.0 30 > th dose independent rect. 2 14
131 61.03 humidity 50.0 90 < th dose dependent sin 14 NA
133 61.03 humidity 50.0 270 < th dose dependent no NA NA
272 61.04 humidity 50.0 30 < th dose dependent sin 12 NA
308 61.05 humidity 50.0 270 < th dose independent rect. 12 3
310 61.06 humidity 50.0 90 < th dose independent sin 12 NA
323 61.08 wind 1.0 14400 < th dose dependent rect. 6 1
343 61.09 radiation 20.0 90 > th dose independent rect. 12 22
372 61.11 wind 3.0 10 < th dose dependent rect. 2 1
402 61.12 temperature 10.0 30 > th dose dependent rect. 2 1
406 61.13 humidity 50.0 270 < th dose independent no NA NA
409 61.13 temperature 10.0 30 > th dose independent rect. 2 1
411 61.13 temperature 25.0 30 < th dose independent rect. 2 1
413 61.13 humidity 50.0 30 > th dose independent rect. 2 1
416 61.13 humidity 90.0 30 > th dose independent rect. 2 1
417 61.13 atmosphere 995.0 30 > th dose independent rect. 2 1
418 61.13 atmosphere 1010.0 30 < th dose independent rect. 2 1
420 61.13 radiation 1.0 30 < th dose independent rect. 2 1
425 61.13 precipitation 0.1 30 < th dose independent rect. 2 1
548 61.13 temperature 10.0 30 > th dose independent rect. 3 23
558 61.13 humidity 50.0 270 < th dose independent rect. 17 23
567 61.13 temperature 30.0 30 < th dose dependent rect. 2 1
568 61.13 humidity 50.0 30 > th dose dependent rect. 2 1
571 61.13 radiation 1.0 30 < th dose dependent rect. 2 1
576 61.13 precipitation 0.1 30 < th dose dependent rect. 2 1
630 61.17 wind 1.0 30 > th dose independent rect. 2 1
637 61.18 humidity 50.0 270 > th dose independent sin 3 NA
724 61.24 humidity 50.0 30 < th dose dependent rect. 14 4
745 61.25 humidity 50.0 10 < th dose independent rect. 15 2
761 61.27 humidity 50.0 270 < th dose dependent sin 7 NA
769 61.28 humidity 50.0 270 < th dose dependent rect. 15 23
775 61.29 temperature 10.0 30 > th dose dependent rect. 3 23
799 61.32 humidity 50.0 270 > th dose independent no NA NA
806 61.33 radiation 1.0 90 < th dose dependent rect. 1 23
813 61.35 precipitation 0.1 30 < th dose independent rect. 3 23
815 61.35 temperature 25.0 90 > th dose dependent rect. 14 21
817 61.35 precipitation 0.1 30 < th dose dependent rect. 3 23
839 61.36 radiation 20.0 30 < th dose dependent rect. 3 21
840 61.36 humidity 50.0 30 > th dose dependent rect. 3 23
922 61.39 radiation 1.0 4320 < th dose dependent rect. 3 1
946 61.41 radiation 1.0 90 < th dose independent rect. 1 23
951 61.42 wind 9.0 1440 < th dose independent rect. 3 1
952 61.42 temperature 10.0 1440 > th dose independent rect. 3 1
955 61.42 temperature 30.0 1440 < th dose independent rect. 3 1
959 61.42 humidity 50.0 1440 > th dose independent rect. 3 1
968 61.42 humidity 70.0 14400 < th dose independent rect. 8 1
969 61.42 atmosphere 995.0 1440 > th dose independent rect. 3 1
970 61.42 radiation 1.0 1440 < th dose independent rect. 3 1
991 61.42 temperature 10.0 1440 > th dose independent rect. 4 23