BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0563000 Os06g0563000|AK099669
         (348 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0563000  Ndr family protein                                  670   0.0  
Os02g0224800  Ndr family protein                                  581   e-166
Os01g0192600  Ndr family protein                                  542   e-154
Os05g0196200  Ndr family protein                                  161   6e-40

>Os06g0563000 Ndr family protein
          Length = 348

 Score =  670 bits (1729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/335 (96%), Positives = 322/335 (96%)

Query: 14  ERISFGGKEHHIQTNHGSVSVAVYGDHDKPALVTYPDIALNHMSCFQGLLFCPEASSLLL 73
           ERISFGGKEHHIQTNHGSVSVAVYGDHDKPALVTYPDIALNHMSCFQGLLFCPEASSLLL
Sbjct: 14  ERISFGGKEHHIQTNHGSVSVAVYGDHDKPALVTYPDIALNHMSCFQGLLFCPEASSLLL 73

Query: 74  HNFCIYHISPPGHELGXXXXXXXXXXXXXDELADQVSDVLDFFGLGPVMCLGVTAGAYIL 133
           HNFCIYHISPPGHELG             DELADQVSDVLDFFGLGPVMCLGVTAGAYIL
Sbjct: 74  HNFCIYHISPPGHELGAAPVSPSSPVASVDELADQVSDVLDFFGLGPVMCLGVTAGAYIL 133

Query: 134 TLFATKYRERVLGLILVSPLCRTPSWTEWFHNKVMSNLLYYYGMCNMVKDCLLQRYFSKG 193
           TLFATKYRERVLGLILVSPLCRTPSWTEWFHNKVMSNLLYYYGMCNMVKDCLLQRYFSKG
Sbjct: 134 TLFATKYRERVLGLILVSPLCRTPSWTEWFHNKVMSNLLYYYGMCNMVKDCLLQRYFSKG 193

Query: 194 VQGCSAVPESDIVQASRSFLDQRQSMNVWRFIHTINERHDLTESLKELQCRTLIFVGQNS 253
           VQGCSAVPESDIVQASRSFLDQRQSMNVWRFIHTINERHDLTESLKELQCRTLIFVGQNS
Sbjct: 194 VQGCSAVPESDIVQASRSFLDQRQSMNVWRFIHTINERHDLTESLKELQCRTLIFVGQNS 253

Query: 254 QFHAEAVHMTSKLDERYSALVEVQGCGSVVTEEQPHAMLMPLEYFLMGYGLYRPSQISCS 313
           QFHAEAVHMTSKLDERYSALVEVQGCGSVVTEEQPHAMLMPLEYFLMGYGLYRPSQISCS
Sbjct: 254 QFHAEAVHMTSKLDERYSALVEVQGCGSVVTEEQPHAMLMPLEYFLMGYGLYRPSQISCS 313

Query: 314 PRSPLNPFCISPELLSPESMGVKLKPIKTRANLEV 348
           PRSPLNPFCISPELLSPESMGVKLKPIKTRANLEV
Sbjct: 314 PRSPLNPFCISPELLSPESMGVKLKPIKTRANLEV 348



>Os02g0224800 Ndr family protein
          Length = 348

 Score =  581 bits (1498), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 274/335 (81%), Positives = 298/335 (88%)

Query: 14  ERISFGGKEHHIQTNHGSVSVAVYGDHDKPALVTYPDIALNHMSCFQGLLFCPEASSLLL 73
           ERISFGGKEHHI TNHG VSVAVYGDHDKPALVTYPDIALNHMSCFQGLLFCPEA+SLLL
Sbjct: 14  ERISFGGKEHHIHTNHGPVSVAVYGDHDKPALVTYPDIALNHMSCFQGLLFCPEAASLLL 73

Query: 74  HNFCIYHISPPGHELGXXXXXXXXXXXXXDELADQVSDVLDFFGLGPVMCLGVTAGAYIL 133
           HNFCIYHISPPGHELG             D+LADQV+DVLDFFGLG VMCLGV+AGAYIL
Sbjct: 74  HNFCIYHISPPGHELGAAPISPNAPIPSVDDLADQVADVLDFFGLGSVMCLGVSAGAYIL 133

Query: 134 TLFATKYRERVLGLILVSPLCRTPSWTEWFHNKVMSNLLYYYGMCNMVKDCLLQRYFSKG 193
           TLFA KYR+RVLGLILVSPLC+ P+WTEWF+NKV SNLLYYYGMC +VK+ LLQRYFSK 
Sbjct: 134 TLFAAKYRDRVLGLILVSPLCKPPTWTEWFYNKVASNLLYYYGMCGLVKEGLLQRYFSKE 193

Query: 194 VQGCSAVPESDIVQASRSFLDQRQSMNVWRFIHTINERHDLTESLKELQCRTLIFVGQNS 253
           V+GCS +PESDIVQA RS LDQRQSMNVWRF+ T+N R+DLTE LK+LQCRTLIFVG+ S
Sbjct: 194 VRGCSDLPESDIVQACRSLLDQRQSMNVWRFVQTMNMRYDLTEDLKQLQCRTLIFVGEYS 253

Query: 254 QFHAEAVHMTSKLDERYSALVEVQGCGSVVTEEQPHAMLMPLEYFLMGYGLYRPSQISCS 313
           QFH EAVHMTSKLD RY ALVEVQ CGS++TEEQPHAML+P+EYF MGYGLYRPSQ+ CS
Sbjct: 254 QFHTEAVHMTSKLDRRYCALVEVQACGSLITEEQPHAMLIPMEYFFMGYGLYRPSQLDCS 313

Query: 314 PRSPLNPFCISPELLSPESMGVKLKPIKTRANLEV 348
           PRSPL+PFCISP+LLSPESMGVKLKPIKTR  LEV
Sbjct: 314 PRSPLSPFCISPDLLSPESMGVKLKPIKTRVRLEV 348



>Os01g0192600 Ndr family protein
          Length = 347

 Score =  542 bits (1396), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 253/335 (75%), Positives = 288/335 (85%)

Query: 14  ERISFGGKEHHIQTNHGSVSVAVYGDHDKPALVTYPDIALNHMSCFQGLLFCPEASSLLL 73
           ERISFGGKEH ++T +GSVSV+V+GD DKPAL+TYPD+ALN+MSCFQGL FCPEA+SLLL
Sbjct: 13  ERISFGGKEHRVRTRYGSVSVSVFGDEDKPALITYPDVALNYMSCFQGLFFCPEAASLLL 72

Query: 74  HNFCIYHISPPGHELGXXXXXXXXXXXXXDELADQVSDVLDFFGLGPVMCLGVTAGAYIL 133
           HNFCIYHI+P GHELG             DEL DQV+DVLDFFGLG VMCLGVTAGAYIL
Sbjct: 73  HNFCIYHITPQGHELGAAPISSDVPVPSVDELVDQVADVLDFFGLGSVMCLGVTAGAYIL 132

Query: 134 TLFATKYRERVLGLILVSPLCRTPSWTEWFHNKVMSNLLYYYGMCNMVKDCLLQRYFSKG 193
           TLFATKYR+RV+GL+LVSPLC+ PSW+EW +NKV+ NLLYYYG   +VK+CLLQRYFS  
Sbjct: 133 TLFATKYRDRVIGLMLVSPLCKAPSWSEWLYNKVLLNLLYYYGSRGLVKECLLQRYFSTE 192

Query: 194 VQGCSAVPESDIVQASRSFLDQRQSMNVWRFIHTINERHDLTESLKELQCRTLIFVGQNS 253
           V+G    PES+IVQA RS L +RQ  NVWRF+  INERHDLTE+LK+LQCRTLIFVG+NS
Sbjct: 193 VRGNGQDPESEIVQACRSLLHERQGSNVWRFLQAINERHDLTEALKKLQCRTLIFVGENS 252

Query: 254 QFHAEAVHMTSKLDERYSALVEVQGCGSVVTEEQPHAMLMPLEYFLMGYGLYRPSQISCS 313
           QFH +AVHMT+KLD RY ALVEVQ CGS+VTEEQPHAML+P+EYFLMGYGLYRPSQ+  S
Sbjct: 253 QFHDDAVHMTTKLDRRYCALVEVQACGSLVTEEQPHAMLIPMEYFLMGYGLYRPSQLDSS 312

Query: 314 PRSPLNPFCISPELLSPESMGVKLKPIKTRANLEV 348
           PRS LNPFCISPELLSPESMGVKLKPIKTR +L+V
Sbjct: 313 PRSTLNPFCISPELLSPESMGVKLKPIKTRISLKV 347



>Os05g0196200 Ndr family protein
          Length = 127

 Score =  161 bits (408), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 75/104 (72%), Positives = 85/104 (81%)

Query: 14  ERISFGGKEHHIQTNHGSVSVAVYGDHDKPALVTYPDIALNHMSCFQGLLFCPEASSLLL 73
           ERISFGGKEH ++T  GS+SVA+YGD DKPAL+TYPDIALNHMSCFQGLLFCPE +SLLL
Sbjct: 19  ERISFGGKEHQVRTRCGSLSVAIYGDEDKPALITYPDIALNHMSCFQGLLFCPEVASLLL 78

Query: 74  HNFCIYHISPPGHELGXXXXXXXXXXXXXDELADQVSDVLDFFG 117
           HNFCIYHI+P GHELG             ++LADQV+DVLDFFG
Sbjct: 79  HNFCIYHINPQGHELGAAPIPSDVPVPSVEDLADQVADVLDFFG 122



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.138    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,210,105
Number of extensions: 437911
Number of successful extensions: 813
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 813
Number of HSP's successfully gapped: 4
Length of query: 348
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 246
Effective length of database: 11,709,973
Effective search space: 2880653358
Effective search space used: 2880653358
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 156 (64.7 bits)