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Os02g0224800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Ndr family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.81 (0.0296) R2 : 0.643
β1 : -1.64 (0.11) R2dD : 0.207 R2D : 0.121
β2 : 1.5 (0.0704) R2dC : 0.382 R2C : 0.411
β3 : 0.822 (0.0911) R2dE : 0.0714 R2E : 0.0689
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.213 (0.0645) R2dN8 : 0.0113 R2N8 : 0.00634
σ : 0.549
deviance : 138.82
__
_____
C
peak time of C : 0.657
E
wheather : temperature
threshold : 33.09
memory length : 2583
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
128.34 0.532 9.91 -2.42 1.54 1.23 1.57 -4.28 -0.239 0.797 30.2 2525 -- --
132.13 0.535 9.84 -1.68 1.59 0.9 1.55 -- -0.222 0.689 31.9 3924 -- --
138.59 0.548 9.9 -2.36 1.53 1.21 -- -3.63 -0.225 0.807 30.5 2522 -- --
138.82 0.549 9.81 -1.64 1.5 0.822 -- -- -0.213 0.657 33.09 2583 -- --
282.58 0.783 9.87 -2.29 -- 1.4 -- -2.98 -0.203 -- 30.06 2518 -- --
150.53 0.575 9.86 -1.47 1.64 -- 1.69 -- -0.364 0.769 -- -- -- --
162.63 0.597 9.86 -1.53 1.63 -- -- -- -0.373 0.805 -- -- -- --
283.89 0.785 9.79 -1.74 -- 1.09 -- -- -0.16 -- 33.13 2487 -- --
212.79 0.679 9.8 -- 1.55 0.459 -- -- -0.102 0.727 34.14 2760 -- --
329.48 0.848 9.84 -1.47 -- -- -- -- -0.343 -- -- -- -- --
224.62 0.701 9.83 -- 1.61 -- -- -- -0.202 0.762 -- -- -- --
359.39 0.883 9.77 -- -- 0.709 -- -- -0.0299 -- 34.08 2566 -- --
386.79 0.918 9.8 -- -- -- -- -- -0.179 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 116.62 temperature 15.0 270 > th dose dependent rect. 24 5
22 120.92 temperature 20.0 270 > th dose independent rect. 24 5
25 121.27 precipitation 0.1 270 < th dose independent rect. 5 19
26 121.27 precipitation 0.1 270 < th dose dependent rect. 5 19
27 121.32 wind 5.0 270 < th dose independent rect. 24 5
28 121.49 radiation 1.0 270 < th dose dependent rect. 24 5
31 121.60 radiation 1.0 270 < th dose independent rect. 24 5
34 121.63 atmosphere 1010.0 270 < th dose independent rect. 24 5
39 121.65 temperature 10.0 270 > th dose independent rect. 24 5
41 121.65 temperature 30.0 270 < th dose independent rect. 24 5
42 121.65 humidity 50.0 270 > th dose independent rect. 24 5
45 121.65 atmosphere 995.0 270 > th dose independent rect. 24 5
49 121.65 temperature 10.0 270 > th dose independent rect. 5 19
50 121.68 wind 9.0 270 < th dose dependent rect. 24 5
52 121.73 temperature 15.0 10 > th dose dependent rect. 2 4
57 121.87 precipitation 0.1 270 < th dose independent rect. 24 5
58 121.87 precipitation 0.1 270 < th dose dependent rect. 24 5
59 121.90 wind 9.0 270 < th dose independent rect. 5 19
63 122.12 precipitation 0.1 90 < th dose independent rect. 5 22
64 122.12 precipitation 0.1 90 < th dose dependent rect. 5 22
68 122.32 temperature 20.0 270 > th dose independent rect. 1 3
71 122.41 wind 9.0 270 < th dose dependent rect. 1 2
72 122.44 radiation 1.0 90 < th dose dependent sin 2 NA
78 122.63 humidity 50.0 270 > th dose dependent rect. 24 5
79 122.65 atmosphere 995.0 270 > th dose independent rect. 5 19
84 122.71 wind 5.0 270 < th dose independent rect. 1 2
102 122.93 precipitation 0.1 270 < th dose independent rect. 1 2
103 122.93 precipitation 0.1 270 < th dose dependent rect. 1 2
114 123.03 temperature 10.0 270 > th dose independent rect. 1 2
116 123.03 temperature 30.0 270 < th dose independent rect. 1 2
117 123.03 humidity 50.0 270 > th dose independent rect. 1 2
120 123.03 atmosphere 995.0 270 > th dose independent rect. 1 2
121 123.03 atmosphere 1010.0 270 < th dose independent rect. 1 2
123 123.03 radiation 1.0 270 < th dose independent rect. 1 2
128 123.03 temperature 10.0 270 > th dose independent rect. 3 22
129 123.03 radiation 1.0 270 < th dose dependent rect. 1 2
140 123.19 humidity 50.0 270 > th dose dependent rect. 1 2
185 123.47 radiation 1.0 90 < th dose independent rect. 3 2
187 123.47 radiation 10.0 90 < th dose dependent rect. 3 2
212 123.54 radiation 1.0 270 < th dose dependent rect. 24 8
234 123.57 temperature 10.0 90 > th dose independent rect. 3 2
236 123.57 temperature 30.0 90 < th dose independent rect. 3 2
237 123.57 humidity 50.0 90 > th dose independent rect. 3 2
240 123.57 atmosphere 995.0 90 > th dose independent rect. 3 2
241 123.57 atmosphere 1010.0 90 < th dose independent rect. 3 2
250 123.65 wind 9.0 270 < th dose independent rect. 3 22
252 123.69 precipitation 0.1 90 < th dose independent rect. 3 2
253 123.69 precipitation 0.1 90 < th dose dependent rect. 3 2
261 123.75 temperature 15.0 270 > th dose independent rect. 9 10
267 123.81 temperature 30.0 270 < th dose dependent rect. 18 6
270 123.85 humidity 50.0 90 > th dose dependent rect. 3 2
278 124.02 radiation 1.0 270 < th dose dependent rect. 24 15
286 124.10 radiation 1.0 270 < th dose dependent rect. 24 17
288 124.11 radiation 1.0 270 < th dose independent rect. 24 8
292 124.13 wind 1.0 270 > th dose independent rect. 24 5
300 124.16 temperature 20.0 10 > th dose independent rect. 2 4
301 124.16 radiation 10.0 10 < th dose independent rect. 2 4
303 124.17 radiation 1.0 90 < th dose independent rect. 2 6
304 124.19 radiation 20.0 4320 < th dose independent rect. 3 3
326 124.25 radiation 10.0 10 < th dose dependent rect. 2 6
332 124.30 radiation 1.0 90 < th dose independent rect. 2 10
337 124.32 wind 9.0 270 < th dose dependent rect. 5 19
343 124.40 radiation 1.0 90 < th dose independent rect. 2 13
347 124.41 radiation 20.0 10 < th dose dependent rect. 2 4
350 124.43 radiation 1.0 90 > th dose independent sin 3 NA
352 124.46 temperature 30.0 270 < th dose dependent rect. 19 4
357 124.51 radiation 1.0 90 < th dose independent rect. 2 15
358 124.51 radiation 1.0 270 < th dose dependent rect. 5 19
364 124.58 radiation 1.0 270 < th dose independent rect. 24 15
366 124.58 temperature 15.0 720 > th dose dependent rect. 17 3
368 124.58 radiation 10.0 10 < th dose dependent rect. 2 19
373 124.64 radiation 1.0 270 < th dose independent rect. 24 13
386 124.76 radiation 1.0 90 < th dose independent sin 3 NA
392 124.79 wind 9.0 10 < th dose dependent rect. 2 4
394 124.80 radiation 1.0 90 < th dose dependent rect. 2 6
410 124.91 radiation 10.0 10 < th dose dependent rect. 2 12
411 124.91 radiation 1.0 90 < th dose dependent rect. 3 14
413 124.93 humidity 70.0 270 > th dose independent rect. 18 6
414 124.93 humidity 60.0 270 > th dose independent rect. 19 14
415 124.93 radiation 1.0 90 < th dose dependent rect. 2 10
440 125.03 temperature 30.0 270 < th dose independent rect. 19 14
465 125.06 radiation 1.0 270 < th dose dependent rect. 18 6
466 125.08 wind 5.0 10 < th dose independent rect. 2 4
493 125.17 temperature 10.0 270 > th dose dependent rect. 15 14
501 125.21 temperature 30.0 10 < th dose dependent rect. 20 6
531 125.36 humidity 50.0 270 > th dose dependent rect. 18 6
533 125.37 temperature 10.0 10 > th dose independent rect. 2 4
535 125.37 temperature 30.0 10 < th dose independent rect. 2 4
536 125.37 humidity 50.0 10 > th dose independent rect. 2 4
539 125.37 atmosphere 995.0 10 > th dose independent rect. 2 4
540 125.37 atmosphere 1010.0 10 < th dose independent rect. 2 4
545 125.37 temperature 10.0 10 > th dose independent rect. 6 20
550 125.39 atmosphere 1015.0 270 < th dose independent rect. 9 10
551 125.39 temperature 10.0 270 > th dose independent rect. 19 14
553 125.39 atmosphere 995.0 270 > th dose independent rect. 19 14
559 125.42 wind 9.0 270 < th dose independent rect. 19 14
560 125.43 wind 9.0 270 < th dose dependent rect. 19 4
562 125.43 temperature 30.0 10 < th dose dependent rect. 18 8
566 125.46 radiation 40.0 270 < th dose independent rect. 19 14
567 125.46 atmosphere 1015.0 270 < th dose independent rect. 23 20
575 125.50 humidity 50.0 270 > th dose independent rect. 5 19
576 125.50 wind 9.0 270 < th dose dependent rect. 21 2
577 125.50 atmosphere 1015.0 90 < th dose dependent rect. 3 2
580 125.51 temperature 30.0 270 < th dose independent rect. 18 6
584 125.53 radiation 1.0 270 < th dose independent rect. 18 6
588 125.55 humidity 50.0 10 > th dose dependent rect. 2 4
592 125.60 wind 1.0 270 > th dose independent rect. 1 2
598 125.62 temperature 15.0 270 > th dose independent rect. 23 20
608 125.69 wind 9.0 270 < th dose dependent rect. 18 6
613 125.72 temperature 15.0 270 > th dose independent rect. 24 18
622 125.75 wind 9.0 270 < th dose independent rect. 9 10
623 125.75 precipitation 0.1 10 < th dose independent rect. 6 20
626 125.75 precipitation 0.1 10 < th dose dependent rect. 6 20
657 125.89 atmosphere 995.0 90 > th dose dependent rect. 3 2
671 125.94 temperature 15.0 270 > th dose independent rect. 19 5
677 125.96 atmosphere 995.0 270 > th dose independent rect. 18 6
678 125.96 radiation 1.0 270 < th dose dependent rect. 8 16
708 126.03 wind 9.0 270 < th dose independent rect. 19 5
711 126.03 atmosphere 995.0 270 > th dose dependent rect. 19 4
727 126.08 wind 9.0 10 < th dose independent rect. 6 20
778 126.17 wind 9.0 270 < th dose independent rect. 24 19
782 126.18 temperature 15.0 270 > th dose independent rect. 5 10
784 126.18 radiation 1.0 270 < th dose independent rect. 5 19
791 126.20 atmosphere 995.0 270 > th dose dependent rect. 18 6
799 126.23 precipitation 0.1 10 < th dose independent rect. 2 4
815 126.23 precipitation 0.1 10 < th dose dependent rect. 2 4
866 126.30 precipitation 0.1 270 < th dose independent rect. 18 6
868 126.30 precipitation 0.1 270 < th dose dependent rect. 18 6
888 126.36 precipitation 0.1 270 < th dose independent rect. 19 14
891 126.36 precipitation 0.1 270 < th dose dependent rect. 19 14
939 126.55 wind 5.0 270 < th dose independent rect. 21 2
993 126.62 humidity 50.0 270 > th dose dependent rect. 5 19
999 126.65 humidity 80.0 270 > th dose independent rect. 21 2