BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0224800 Os02g0224800|AK066213
         (348 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0224800  Ndr family protein                                  664   0.0  
Os06g0563000  Ndr family protein                                  581   e-166
Os01g0192600  Ndr family protein                                  539   e-153
Os05g0196200  Ndr family protein                                  138   5e-33

>Os02g0224800 Ndr family protein
          Length = 348

 Score =  664 bits (1713), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/348 (92%), Positives = 323/348 (92%)

Query: 1   MGDSGGSVVSIDVERISFGGKEHHIHTNHGPVSVAVYGDHDKPALVTYPDIALNHMSCFQ 60
           MGDSGGSVVSIDVERISFGGKEHHIHTNHGPVSVAVYGDHDKPALVTYPDIALNHMSCFQ
Sbjct: 1   MGDSGGSVVSIDVERISFGGKEHHIHTNHGPVSVAVYGDHDKPALVTYPDIALNHMSCFQ 60

Query: 61  GLLFCPEAASLLLHNFCIYHISPPGHELGXXXXXXXXXXXXXXXXXXXXXXXXXFFGLGS 120
           GLLFCPEAASLLLHNFCIYHISPPGHELG                         FFGLGS
Sbjct: 61  GLLFCPEAASLLLHNFCIYHISPPGHELGAAPISPNAPIPSVDDLADQVADVLDFFGLGS 120

Query: 121 VMCLGVSAGAYILTLFAAKYRDRVLGLILVSPLCKPPTWTEWFYNKVASNLLYYYGMCGL 180
           VMCLGVSAGAYILTLFAAKYRDRVLGLILVSPLCKPPTWTEWFYNKVASNLLYYYGMCGL
Sbjct: 121 VMCLGVSAGAYILTLFAAKYRDRVLGLILVSPLCKPPTWTEWFYNKVASNLLYYYGMCGL 180

Query: 181 VKEGLLQRYFSKEVRGCSDLPESDIVQACRSLLDQRQSMNVWRFVQTMNMRYDLTEDLKQ 240
           VKEGLLQRYFSKEVRGCSDLPESDIVQACRSLLDQRQSMNVWRFVQTMNMRYDLTEDLKQ
Sbjct: 181 VKEGLLQRYFSKEVRGCSDLPESDIVQACRSLLDQRQSMNVWRFVQTMNMRYDLTEDLKQ 240

Query: 241 LQCRTLIFVGEYSQFHTEAVHMTSKLDRRYCALVEVQACGSLITEEQPHAMLIPMEYFFM 300
           LQCRTLIFVGEYSQFHTEAVHMTSKLDRRYCALVEVQACGSLITEEQPHAMLIPMEYFFM
Sbjct: 241 LQCRTLIFVGEYSQFHTEAVHMTSKLDRRYCALVEVQACGSLITEEQPHAMLIPMEYFFM 300

Query: 301 GYGLYRPSQLDCSPRSPLSPFCISPDLLSPESMGVKLKPIKTRVRLEV 348
           GYGLYRPSQLDCSPRSPLSPFCISPDLLSPESMGVKLKPIKTRVRLEV
Sbjct: 301 GYGLYRPSQLDCSPRSPLSPFCISPDLLSPESMGVKLKPIKTRVRLEV 348



>Os06g0563000 Ndr family protein
          Length = 348

 Score =  581 bits (1497), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 276/348 (79%), Positives = 299/348 (85%)

Query: 1   MGDSGGSVVSIDVERISFGGKEHHIHTNHGPVSVAVYGDHDKPALVTYPDIALNHMSCFQ 60
           MGDSGGSVVS+DVERISFGGKEHHI TNHG VSVAVYGDHDKPALVTYPDIALNHMSCFQ
Sbjct: 1   MGDSGGSVVSVDVERISFGGKEHHIQTNHGSVSVAVYGDHDKPALVTYPDIALNHMSCFQ 60

Query: 61  GLLFCPEAASLLLHNFCIYHISPPGHELGXXXXXXXXXXXXXXXXXXXXXXXXXFFGLGS 120
           GLLFCPEA+SLLLHNFCIYHISPPGHELG                         FFGLG 
Sbjct: 61  GLLFCPEASSLLLHNFCIYHISPPGHELGAAPVSPSSPVASVDELADQVSDVLDFFGLGP 120

Query: 121 VMCLGVSAGAYILTLFAAKYRDRVLGLILVSPLCKPPTWTEWFYNKVASNLLYYYGMCGL 180
           VMCLGV+AGAYILTLFA KYR+RVLGLILVSPLC+ P+WTEWF+NKV SNLLYYYGMC +
Sbjct: 121 VMCLGVTAGAYILTLFATKYRERVLGLILVSPLCRTPSWTEWFHNKVMSNLLYYYGMCNM 180

Query: 181 VKEGLLQRYFSKEVRGCSDLPESDIVQACRSLLDQRQSMNVWRFVQTMNMRYDLTEDLKQ 240
           VK+ LLQRYFSK V+GCS +PESDIVQA RS LDQRQSMNVWRF+ T+N R+DLTE LK+
Sbjct: 181 VKDCLLQRYFSKGVQGCSAVPESDIVQASRSFLDQRQSMNVWRFIHTINERHDLTESLKE 240

Query: 241 LQCRTLIFVGEYSQFHTEAVHMTSKLDRRYCALVEVQACGSLITEEQPHAMLIPMEYFFM 300
           LQCRTLIFVG+ SQFH EAVHMTSKLD RY ALVEVQ CGS++TEEQPHAML+P+EYF M
Sbjct: 241 LQCRTLIFVGQNSQFHAEAVHMTSKLDERYSALVEVQGCGSVVTEEQPHAMLMPLEYFLM 300

Query: 301 GYGLYRPSQLDCSPRSPLSPFCISPDLLSPESMGVKLKPIKTRVRLEV 348
           GYGLYRPSQ+ CSPRSPL+PFCISP+LLSPESMGVKLKPIKTR  LEV
Sbjct: 301 GYGLYRPSQISCSPRSPLNPFCISPELLSPESMGVKLKPIKTRANLEV 348



>Os01g0192600 Ndr family protein
          Length = 347

 Score =  539 bits (1388), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 262/348 (75%), Positives = 288/348 (82%), Gaps = 1/348 (0%)

Query: 1   MGDSGGSVVSIDVERISFGGKEHHIHTNHGPVSVAVYGDHDKPALVTYPDIALNHMSCFQ 60
           MGDS  SV SIDVERISFGGKEH + T +G VSV+V+GD DKPAL+TYPD+ALN+MSCFQ
Sbjct: 1   MGDSSRSV-SIDVERISFGGKEHRVRTRYGSVSVSVFGDEDKPALITYPDVALNYMSCFQ 59

Query: 61  GLLFCPEAASLLLHNFCIYHISPPGHELGXXXXXXXXXXXXXXXXXXXXXXXXXFFGLGS 120
           GL FCPEAASLLLHNFCIYHI+P GHELG                         FFGLGS
Sbjct: 60  GLFFCPEAASLLLHNFCIYHITPQGHELGAAPISSDVPVPSVDELVDQVADVLDFFGLGS 119

Query: 121 VMCLGVSAGAYILTLFAAKYRDRVLGLILVSPLCKPPTWTEWFYNKVASNLLYYYGMCGL 180
           VMCLGV+AGAYILTLFA KYRDRV+GL+LVSPLCK P+W+EW YNKV  NLLYYYG  GL
Sbjct: 120 VMCLGVTAGAYILTLFATKYRDRVIGLMLVSPLCKAPSWSEWLYNKVLLNLLYYYGSRGL 179

Query: 181 VKEGLLQRYFSKEVRGCSDLPESDIVQACRSLLDQRQSMNVWRFVQTMNMRYDLTEDLKQ 240
           VKE LLQRYFS EVRG    PES+IVQACRSLL +RQ  NVWRF+Q +N R+DLTE LK+
Sbjct: 180 VKECLLQRYFSTEVRGNGQDPESEIVQACRSLLHERQGSNVWRFLQAINERHDLTEALKK 239

Query: 241 LQCRTLIFVGEYSQFHTEAVHMTSKLDRRYCALVEVQACGSLITEEQPHAMLIPMEYFFM 300
           LQCRTLIFVGE SQFH +AVHMT+KLDRRYCALVEVQACGSL+TEEQPHAMLIPMEYF M
Sbjct: 240 LQCRTLIFVGENSQFHDDAVHMTTKLDRRYCALVEVQACGSLVTEEQPHAMLIPMEYFLM 299

Query: 301 GYGLYRPSQLDCSPRSPLSPFCISPDLLSPESMGVKLKPIKTRVRLEV 348
           GYGLYRPSQLD SPRS L+PFCISP+LLSPESMGVKLKPIKTR+ L+V
Sbjct: 300 GYGLYRPSQLDSSPRSTLNPFCISPELLSPESMGVKLKPIKTRISLKV 347



>Os05g0196200 Ndr family protein
          Length = 127

 Score =  138 bits (348), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 63/76 (82%), Positives = 68/76 (89%)

Query: 14 ERISFGGKEHHIHTNHGPVSVAVYGDHDKPALVTYPDIALNHMSCFQGLLFCPEAASLLL 73
          ERISFGGKEH + T  G +SVA+YGD DKPAL+TYPDIALNHMSCFQGLLFCPE ASLLL
Sbjct: 19 ERISFGGKEHQVRTRCGSLSVAIYGDEDKPALITYPDIALNHMSCFQGLLFCPEVASLLL 78

Query: 74 HNFCIYHISPPGHELG 89
          HNFCIYHI+P GHELG
Sbjct: 79 HNFCIYHINPQGHELG 94



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.140    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,785,288
Number of extensions: 459665
Number of successful extensions: 1323
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1320
Number of HSP's successfully gapped: 4
Length of query: 348
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 246
Effective length of database: 11,709,973
Effective search space: 2880653358
Effective search space used: 2880653358
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 156 (64.7 bits)