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Os05g0196200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Ndr family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.77 (0.0407) R2 : 0.642
β1 : -3.03 (0.149) R2dD : 0.334 R2D : 0.327
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.66 (0.083) R2dE : 0.315 R2E : 0.313
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0809 (0.087) R2dN8 : 0.000934 R2N8 : -0.00539
σ : 0.762
deviance : 267.91
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 18.63
memory length : 5
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
263.74 0.763 6.77 -3.03 0.372 1.4 1.44 -1.48 -0.0822 23.5 19.9 8 -- --
268.69 0.763 6.79 -3.01 0.397 1.32 0.37 -- -0.0367 22.8 16.11 16 -- --
265.32 0.759 6.78 -3.05 0.36 1.4 -- -0.353 -0.0933 22.9 19.47 5 -- --
265.85 0.759 6.78 -3.03 0.364 1.41 -- -- -0.0842 22.8 19.46 5 -- --
267.26 0.761 6.77 -3.04 -- 1.67 -- -0.342 -0.0839 -- 18.69 5 -- --
301.29 0.814 6.8 -3.06 1.79 -- 0.128 -- -0.086 23.7 -- -- -- --
301.36 0.813 6.8 -3.06 1.79 -- -- -- -0.0865 23.7 -- -- -- --
267.91 0.762 6.77 -3.03 -- 1.66 -- -- -0.0809 -- 18.63 5 -- --
506.11 1.05 6.7 -- 0.293 1.52 -- -- 0.259 21.6 21.78 6 -- --
503.82 1.05 6.76 -3.01 -- -- -- -- -0.0648 -- -- -- -- --
548.8 1.1 6.73 -- 1.76 -- -- -- 0.255 23.6 -- -- -- --
508.21 1.05 6.69 -- -- 1.66 -- -- 0.256 -- 19.01 6 -- --
743.22 1.27 6.69 -- -- -- -- -- 0.269 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 252.82 radiation 10.0 10 < th dose dependent sin 23 NA
2 252.90 temperature 10.0 270 > th dose dependent rect. 24 9
3 252.90 temperature 10.0 270 > th dose dependent rect. 24 20
4 253.00 temperature 10.0 270 > th dose dependent rect. 1 18
5 253.46 radiation 10.0 10 < th dose dependent rect. 3 17
14 255.24 radiation 10.0 10 < th dose dependent rect. 3 19
21 255.96 radiation 10.0 90 < th dose independent rect. 3 17
22 256.29 temperature 10.0 270 > th dose dependent rect. 15 4
28 256.74 radiation 10.0 10 < th dose dependent rect. 6 14
30 257.00 radiation 40.0 270 < th dose independent rect. 24 19
52 257.78 humidity 90.0 43200 < th dose independent rect. 3 6
55 257.93 radiation 10.0 10 < th dose independent rect. 3 19
56 258.01 radiation 40.0 270 < th dose independent rect. 13 6
63 258.27 humidity 90.0 43200 < th dose independent rect. 4 3
70 258.57 temperature 20.0 270 > th dose independent rect. 15 4
100 259.41 wind 9.0 270 < th dose independent rect. 19 20
103 259.47 temperature 10.0 270 > th dose independent rect. 15 4
105 259.47 atmosphere 1010.0 270 < th dose independent rect. 15 4
108 259.47 temperature 10.0 270 > th dose independent rect. 19 20
120 259.73 temperature 15.0 270 > th dose independent rect. 19 5
126 259.77 wind 1.0 270 > th dose independent rect. 15 4
130 259.91 humidity 80.0 43200 > th dose dependent rect. 4 6
134 260.03 precipitation 0.1 270 < th dose independent rect. 19 20
135 260.03 precipitation 0.1 270 < th dose dependent rect. 19 20
139 260.24 wind 9.0 270 < th dose independent rect. 15 4
149 260.45 atmosphere 995.0 270 > th dose independent rect. 19 20
154 260.52 precipitation 0.1 270 < th dose independent rect. 15 4
155 260.52 precipitation 0.1 270 < th dose dependent rect. 15 4
162 260.61 radiation 20.0 90 < th dose independent rect. 12 9
167 260.71 humidity 50.0 30 > th dose independent rect. 3 17
174 260.96 temperature 20.0 270 > th dose independent rect. 2 17
176 260.98 precipitation 0.1 270 < th dose independent rect. 5 10
177 260.98 precipitation 0.1 270 < th dose dependent rect. 5 10
183 261.05 radiation 30.0 30 < th dose dependent rect. 13 7
184 261.07 radiation 40.0 270 < th dose independent rect. 15 14
194 261.15 wind 1.0 270 > th dose independent rect. 19 6
205 261.20 temperature 10.0 270 > th dose independent rect. 5 10
206 261.20 atmosphere 1015.0 270 < th dose independent rect. 5 10
207 261.20 temperature 10.0 270 > th dose independent rect. 15 14
221 261.40 wind 7.0 270 < th dose independent rect. 19 6
222 261.42 atmosphere 995.0 270 > th dose independent rect. 15 4
232 261.50 humidity 90.0 270 < th dose independent rect. 15 4
247 261.68 temperature 30.0 270 < th dose independent rect. 19 6
248 261.68 humidity 50.0 270 > th dose independent rect. 19 6
249 261.68 atmosphere 995.0 270 > th dose independent rect. 19 6
250 261.68 radiation 1.0 270 < th dose independent rect. 19 6
256 261.68 atmosphere 1015.0 270 < th dose independent rect. 1 18
257 261.68 radiation 1.0 270 < th dose dependent rect. 19 6
265 261.74 atmosphere 1015.0 270 < th dose dependent rect. 15 4
274 261.80 atmosphere 1010.0 270 < th dose independent rect. 24 9
278 261.86 humidity 80.0 43200 > th dose dependent rect. 3 8
291 261.97 wind 9.0 270 < th dose independent rect. 5 10
293 261.99 wind 1.0 270 > th dose independent rect. 1 18
304 262.11 radiation 40.0 270 < th dose independent rect. 24 9
329 262.31 precipitation 0.1 270 < th dose independent rect. 19 6
330 262.31 precipitation 0.1 270 < th dose dependent rect. 19 6
374 262.62 wind 9.0 270 < th dose independent rect. 1 18
383 262.68 radiation 20.0 10 < th dose dependent rect. 12 22
388 262.73 radiation 10.0 30 < th dose independent rect. 8 12
398 262.83 humidity 90.0 43200 < th dose independent rect. 2 13
422 262.88 atmosphere 995.0 270 > th dose independent rect. 1 18
424 262.90 atmosphere 995.0 270 > th dose independent rect. 5 10
440 263.03 temperature 20.0 270 > th dose dependent rect. 14 19
443 263.06 atmosphere 995.0 90 > th dose independent rect. 3 17
446 263.07 precipitation 0.1 270 < th dose independent rect. 1 18
449 263.07 precipitation 0.1 270 < th dose dependent rect. 1 18
456 263.12 wind 9.0 270 < th dose independent rect. 15 14
510 263.58 radiation 1.0 270 > th dose independent rect. 15 4
542 263.72 wind 7.0 43200 > th dose independent rect. 6 4
546 263.75 temperature 10.0 270 > th dose dependent rect. 15 16
547 263.76 wind 7.0 43200 < th dose independent rect. 6 4
558 263.82 temperature 15.0 10 > th dose independent rect. 20 7
563 263.85 humidity 60.0 270 > th dose independent rect. 24 9
588 263.96 wind 7.0 43200 > th dose independent rect. 9 1
601 264.05 atmosphere 995.0 10 > th dose independent rect. 3 17
619 264.08 atmosphere 1015.0 90 < th dose independent rect. 3 17
626 264.09 wind 9.0 270 < th dose independent rect. 9 15
647 264.23 precipitation 0.1 270 < th dose independent rect. 15 14
648 264.23 precipitation 0.1 270 < th dose dependent rect. 15 14
664 264.32 wind 7.0 43200 < th dose independent rect. 9 1
679 264.42 radiation 30.0 90 < th dose dependent rect. 15 18
687 264.49 temperature 10.0 270 > th dose independent rect. 24 9
689 264.49 atmosphere 995.0 270 > th dose independent rect. 24 9
692 264.49 temperature 10.0 270 > th dose independent rect. 9 15
697 264.51 wind 9.0 270 < th dose independent rect. 24 9
701 264.52 temperature 20.0 90 > th dose independent rect. 17 2
726 264.65 radiation 20.0 10 < th dose dependent rect. 16 18
749 264.73 wind 9.0 90 < th dose independent rect. 3 17
755 264.75 radiation 20.0 10 < th dose dependent rect. 15 23
768 264.80 radiation 20.0 10 < th dose dependent no NA NA
777 264.85 radiation 1.0 30 > th dose independent sin 23 NA
801 264.92 humidity 90.0 43200 < th dose independent sin 5 NA
803 264.93 radiation 1.0 30 < th dose independent sin 23 NA
814 265.00 humidity 50.0 270 > th dose dependent rect. 20 4
824 265.06 precipitation 0.1 270 < th dose independent rect. 24 9
825 265.06 precipitation 0.1 270 < th dose dependent rect. 24 9
856 265.13 radiation 20.0 10 < th dose independent rect. 12 10
857 265.13 precipitation 0.1 270 < th dose independent rect. 9 15
860 265.13 precipitation 0.1 270 < th dose dependent rect. 9 15
864 265.18 radiation 30.0 90 < th dose dependent rect. 13 20
889 265.22 radiation 10.0 90 < th dose independent rect. 17 2
896 265.23 humidity 50.0 270 > th dose independent rect. 19 20
905 265.28 wind 9.0 1440 < th dose independent rect. 23 5
909 265.29 temperature 30.0 10 < th dose independent rect. 20 7
910 265.29 humidity 50.0 10 > th dose independent rect. 20 7
913 265.29 atmosphere 995.0 10 > th dose independent rect. 20 7
914 265.29 radiation 1.0 10 < th dose independent rect. 20 7
920 265.29 temperature 10.0 10 > th dose independent rect. 3 17
922 265.29 atmosphere 1015.0 10 < th dose independent rect. 3 17
924 265.29 radiation 1.0 10 < th dose dependent rect. 20 7
933 265.33 wind 9.0 10 < th dose independent rect. 20 7
965 265.39 wind 9.0 270 < th dose dependent rect. 20 4
967 265.39 radiation 40.0 90 < th dose dependent rect. 15 6
982 265.43 precipitation 0.1 10 < th dose independent rect. 3 17
983 265.43 precipitation 0.1 10 < th dose dependent rect. 3 17