BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0196200 Os05g0196200|016-001-D04
         (127 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G56750.1  | chr5:22957986-22960606 FORWARD LENGTH=347          161   1e-40
AT2G19620.1  | chr2:8486131-8488651 REVERSE LENGTH=348            158   6e-40
AT5G11790.1  | chr5:3799682-3802496 FORWARD LENGTH=345            149   3e-37

>AT5G56750.1 | chr5:22957986-22960606 FORWARD LENGTH=347
          Length = 346

 Score =  161 bits (407), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 74/102 (72%), Positives = 86/102 (84%)

Query: 21  ISFGGKEHQVRTRCGSLSVAIYGDEDKPALITYPDIALNHMSCFQGLLFCPEVASLLLHN 80
           I  GGKEH+V+T  G +SV +YGD +KPALITYPD+ALNHMSCFQGL FCPE ASLLLHN
Sbjct: 15  IYLGGKEHRVKTASGVVSVIVYGDREKPALITYPDLALNHMSCFQGLFFCPEAASLLLHN 74

Query: 81  FCIYHINPQGHELGAAPIPSDVPVPSVEDLADQVADVLDFFG 122
           FCIYHI+P GHELGAAPI  +  VPS E+LADQ+ +VL+FFG
Sbjct: 75  FCIYHISPPGHELGAAPICPNDSVPSAENLADQILEVLNFFG 116



>AT2G19620.1 | chr2:8486131-8488651 REVERSE LENGTH=348
          Length = 347

 Score =  158 bits (400), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 73/103 (70%), Positives = 86/103 (83%)

Query: 19  ERISFGGKEHQVRTRCGSLSVAIYGDEDKPALITYPDIALNHMSCFQGLLFCPEVASLLL 78
           E I  GGKEH V+T  GS+SV +YGD++KPALITYPD+ALN+MSCFQGL  CPE  SLLL
Sbjct: 13  EEICNGGKEHHVKTCHGSVSVVVYGDQEKPALITYPDVALNYMSCFQGLFLCPEAVSLLL 72

Query: 79  HNFCIYHINPQGHELGAAPIPSDVPVPSVEDLADQVADVLDFF 121
           HNFCIYHI+P GHE GAAP+ S+ P PSVEDLADQ+ +VL+FF
Sbjct: 73  HNFCIYHISPPGHEFGAAPVCSNDPSPSVEDLADQILEVLNFF 115



>AT5G11790.1 | chr5:3799682-3802496 FORWARD LENGTH=345
          Length = 344

 Score =  149 bits (377), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 70/104 (67%), Positives = 83/104 (79%)

Query: 19  ERISFGGKEHQVRTRCGSLSVAIYGDEDKPALITYPDIALNHMSCFQGLLFCPEVASLLL 78
           E +S GG+EH V T  G + VA+ GD DKPALITYPDIALN+M CFQGLLFCPE +SLLL
Sbjct: 13  EALSLGGQEHLVETTYGPVCVAVCGDPDKPALITYPDIALNYMFCFQGLLFCPEASSLLL 72

Query: 79  HNFCIYHINPQGHELGAAPIPSDVPVPSVEDLADQVADVLDFFG 122
           HNFCIYHI+P GHELGA  I  D P+ S +DLADQ+ +VL++FG
Sbjct: 73  HNFCIYHISPLGHELGAPMISVDAPLLSADDLADQIVEVLNYFG 116



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.141    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,605,757
Number of extensions: 105905
Number of successful extensions: 233
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 233
Number of HSP's successfully gapped: 3
Length of query: 127
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 40
Effective length of database: 8,721,377
Effective search space: 348855080
Effective search space used: 348855080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 105 (45.1 bits)