Os01g0192600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ndr family protein.
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Os01g0192600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ndr family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 185.28 | 0.64 | 9.73 | -4.03 | 0.201 | 1.18 | 0.795 | -2.16 | -0.299 | 4.11 | 31.36 | 1283 | -- | -- |
| 185.64 | 0.635 | 9.69 | -3.69 | 0.178 | 0.977 | 0.945 | -- | -0.283 | 4.83 | 31.34 | 1233 | -- | -- |
| 186.83 | 0.637 | 9.73 | -3.99 | 0.21 | 1.15 | -- | -1.86 | -0.303 | 2.95 | 31.43 | 1286 | -- | -- |
| 186.93 | 0.637 | 9.69 | -3.69 | 0.206 | 0.943 | -- | -- | -0.302 | 2.91 | 31.21 | 1276 | -- | -- |
| 189.27 | 0.641 | 9.72 | -3.98 | -- | 1.18 | -- | -1.75 | -0.291 | -- | 31.25 | 1245 | -- | -- |
| 228.01 | 0.708 | 9.73 | -3.43 | 0.333 | -- | 0.859 | -- | -0.476 | 3.05 | -- | -- | -- | -- |
| 230.26 | 0.711 | 9.73 | -3.45 | 0.335 | -- | -- | -- | -0.48 | 2.37 | -- | -- | -- | -- |
| 189.28 | 0.641 | 9.69 | -3.69 | -- | 0.977 | -- | -- | -0.29 | -- | 31.04 | 1242 | -- | -- |
| 531.9 | 1.07 | 9.63 | -- | 0.198 | 0.513 | -- | -- | -0.0156 | 2.35 | 33.5 | 1082 | -- | -- |
| 236.92 | 0.719 | 9.73 | -3.43 | -- | -- | -- | -- | -0.472 | -- | -- | -- | -- | -- |
| 543.65 | 1.09 | 9.65 | -- | 0.27 | -- | -- | -- | -0.0963 | 2.15 | -- | -- | -- | -- |
| 534.15 | 1.08 | 9.63 | -- | -- | 0.538 | -- | -- | 0.00647 | -- | 33.5 | 1082 | -- | -- |
| 548 | 1.09 | 9.65 | -- | -- | -- | -- | -- | -0.0911 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 170.64 | wind | 1 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 2 | 170.74 | wind | 1 | 270 | < th | dose independent | rect. | 4 | 1 |
| 6 | 178.73 | temperature | 15 | 30 | > th | dose dependent | rect. | 4 | 19 |
| 10 | 180.31 | wind | 1 | 90 | < th | dose dependent | rect. | 4 | 3 |
| 12 | 181.18 | radiation | 30 | 1440 | < th | dose dependent | rect. | 18 | 11 |
| 19 | 181.80 | temperature | 30 | 1440 | > th | dose dependent | rect. | 18 | 15 |
| 20 | 181.96 | wind | 1 | 90 | < th | dose dependent | rect. | 4 | 7 |
| 22 | 182.05 | temperature | 30 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 38 | 182.19 | temperature | 20 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 45 | 182.58 | wind | 1 | 90 | < th | dose dependent | rect. | 4 | 19 |
| 53 | 182.94 | wind | 1 | 90 | < th | dose dependent | rect. | 4 | 13 |
| 59 | 183.04 | temperature | 20 | 90 | > th | dose independent | rect. | 4 | 1 |
| 91 | 183.70 | wind | 1 | 90 | < th | dose independent | rect. | 4 | 7 |
| 95 | 184.12 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 21 |
| 96 | 184.33 | humidity | 50 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 101 | 184.57 | humidity | 50 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 106 | 184.86 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 13 |
| 109 | 184.95 | radiation | 30 | 4320 | < th | dose independent | rect. | 24 | 8 |
| 116 | 185.39 | radiation | 30 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 119 | 185.51 | radiation | 30 | 4320 | < th | dose independent | rect. | 19 | 13 |
| 125 | 185.70 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 134 | 186.01 | radiation | 1 | 1440 | < th | dose independent | rect. | 18 | 11 |
| 135 | 186.06 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 5 |
| 140 | 186.18 | wind | 1 | 90 | < th | dose independent | rect. | 4 | 18 |
| 146 | 186.26 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 153 | 186.32 | temperature | 30 | 1440 | > th | dose dependent | sin | 11 | NA |
| 158 | 186.42 | wind | 1 | 90 | < th | dose independent | rect. | 4 | 13 |
| 162 | 186.47 | temperature | 30 | 1440 | > th | dose dependent | rect. | 16 | 19 |
| 185 | 186.84 | temperature | 30 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 203 | 186.86 | radiation | 1 | 4320 | > th | dose dependent | rect. | 18 | 12 |
| 205 | 186.89 | radiation | 1 | 1440 | < th | dose independent | rect. | 18 | 3 |
| 225 | 186.98 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 226 | 186.99 | radiation | 10 | 1440 | < th | dose dependent | rect. | 18 | 2 |
| 230 | 187.02 | humidity | 60 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 251 | 187.14 | radiation | 1 | 1440 | > th | dose independent | rect. | 18 | 1 |
| 328 | 187.59 | radiation | 1 | 4320 | > th | dose dependent | rect. | 4 | 2 |
| 342 | 187.64 | temperature | 30 | 1440 | > th | dose dependent | rect. | 10 | 9 |
| 388 | 187.68 | radiation | 30 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 389 | 187.68 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 501 | 187.73 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 7 |
| 502 | 187.74 | temperature | 20 | 30 | > th | dose independent | rect. | 4 | 19 |
| 511 | 187.84 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 15 |
| 512 | 187.85 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 15 |
| 517 | 187.87 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 4 |
| 533 | 187.89 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 2 |
| 555 | 187.94 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 17 |
| 559 | 187.95 | radiation | 30 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 572 | 187.95 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 13 |
| 576 | 187.96 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 593 | 187.98 | humidity | 90 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 621 | 188.10 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 624 | 188.11 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 630 | 188.15 | wind | 1 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 647 | 188.25 | humidity | 70 | 4320 | < th | dose dependent | rect. | 19 | 1 |
| 674 | 188.38 | temperature | 30 | 1440 | > th | dose independent | rect. | 18 | 17 |
| 676 | 188.38 | humidity | 60 | 14400 | < th | dose dependent | rect. | 17 | 15 |
| 693 | 188.41 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 5 |
| 714 | 188.53 | humidity | 50 | 4320 | > th | dose independent | rect. | 13 | 4 |
| 725 | 188.56 | humidity | 60 | 14400 | < th | dose dependent | rect. | 17 | 5 |
| 795 | 188.76 | radiation | 10 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 838 | 188.85 | temperature | 30 | 1440 | > th | dose independent | sin | 11 | NA |
| 839 | 188.85 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 20 |
| 863 | 188.88 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 20 |
| 871 | 188.89 | temperature | 30 | 1440 | < th | dose independent | sin | 11 | NA |
| 876 | 188.90 | radiation | 40 | 14400 | > th | dose dependent | rect. | 15 | 18 |
| 904 | 189.02 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 12 |
| 906 | 189.02 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 921 | 189.06 | humidity | 50 | 14400 | < th | dose independent | rect. | 16 | 18 |
| 932 | 189.10 | temperature | 20 | 30 | > th | dose independent | rect. | 4 | 3 |
| 944 | 189.15 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 13 |