BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0192600 Os01g0192600|AK100731
(347 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G11790.1 | chr5:3799682-3802496 FORWARD LENGTH=345 512 e-145
AT5G56750.1 | chr5:22957986-22960606 FORWARD LENGTH=347 509 e-145
AT2G19620.1 | chr2:8486131-8488651 REVERSE LENGTH=348 489 e-139
>AT5G11790.1 | chr5:3799682-3802496 FORWARD LENGTH=345
Length = 344
Score = 512 bits (1319), Expect = e-145, Method: Compositional matrix adjust.
Identities = 247/345 (71%), Positives = 284/345 (82%), Gaps = 1/345 (0%)
Query: 1 MGDSSRSVSIDVERISFGGKEHRVRTRYGSVSVSVFGDEDKPALITYPDVALNYMSCFQG 60
M DSS SVSID+E +S GG+EH V T YG V V+V GD DKPALITYPD+ALNYM CFQG
Sbjct: 1 MADSSDSVSIDMEALSLGGQEHLVETTYGPVCVAVCGDPDKPALITYPDIALNYMFCFQG 60
Query: 61 LFFCPEAASLLLHNFCIYHITPQGHELGAAPISSDVPVPSVDELVDQVADVLDFFGLGSV 120
L FCPEA+SLLLHNFCIYHI+P GHELGA IS D P+ S D+L DQ+ +VL++FGLG+V
Sbjct: 61 LLFCPEASSLLLHNFCIYHISPLGHELGAPMISVDAPLLSADDLADQIVEVLNYFGLGAV 120
Query: 121 MCLGVTAGAYILTLFATKYRDRVIGLMLVSPLCKAPSWSEWXXXXXXXXXXXXXGSRGLV 180
MC+GVTAGAYILTLFA KYR RV+GL+LVSPLC+APSWSEW G+ G+V
Sbjct: 121 MCMGVTAGAYILTLFAMKYRQRVLGLILVSPLCQAPSWSEWLCNKVMSNLLYYYGTCGVV 180
Query: 181 KECLLQRYFSTEVRGNGQDPESEIVQACRSLLHERQGSNVWRFLQAINERHDLTEALKKL 240
KE LL+RYFS EVRGNG PES+IVQ CR LL ERQ +NVWRFL+AIN R DL+E L+KL
Sbjct: 181 KEMLLKRYFSKEVRGNGHVPESDIVQECRRLLSERQSTNVWRFLEAINGRVDLSEGLRKL 240
Query: 241 QCRTLIFVGENSQFHDDAVHMTTKLDRRYCALVEVQACGSLVTEEQPHAMLIPMEYFLMG 300
QCRTLIF+GENS +H +AVHMTTKLDRRY ALVEVQ GSLV+EEQP AM+IPMEYFLMG
Sbjct: 241 QCRTLIFIGENSAYHSEAVHMTTKLDRRYGALVEVQGSGSLVSEEQPQAMIIPMEYFLMG 300
Query: 301 YGLYRPSQLDSSPRSTLNPFCISPELLSPESMGVKLKPIKTRISL 345
YGLYRP+Q SPRS L+P ISPELLSPE+MG+KLKPIKTR++L
Sbjct: 301 YGLYRPTQ-SVSPRSPLSPTRISPELLSPENMGLKLKPIKTRLAL 344
>AT5G56750.1 | chr5:22957986-22960606 FORWARD LENGTH=347
Length = 346
Score = 509 bits (1312), Expect = e-145, Method: Compositional matrix adjust.
Identities = 247/344 (71%), Positives = 279/344 (81%)
Query: 1 MGDSSRSVSIDVERISFGGKEHRVRTRYGSVSVSVFGDEDKPALITYPDVALNYMSCFQG 60
M DS +VS+DV I GGKEHRV+T G VSV V+GD +KPALITYPD+ALN+MSCFQG
Sbjct: 1 MTDSYGAVSVDVGTIYLGGKEHRVKTASGVVSVIVYGDREKPALITYPDLALNHMSCFQG 60
Query: 61 LFFCPEAASLLLHNFCIYHITPQGHELGAAPISSDVPVPSVDELVDQVADVLDFFGLGSV 120
LFFCPEAASLLLHNFCIYHI+P GHELGAAPI + VPS + L DQ+ +VL+FFGLG V
Sbjct: 61 LFFCPEAASLLLHNFCIYHISPPGHELGAAPICPNDSVPSAENLADQILEVLNFFGLGVV 120
Query: 121 MCLGVTAGAYILTLFATKYRDRVIGLMLVSPLCKAPSWSEWXXXXXXXXXXXXXGSRGLV 180
MC+GVTAGAYILTLFA K+R+RV+GL+LVSPLCKAPSWSEW G G+V
Sbjct: 121 MCMGVTAGAYILTLFAMKHRERVLGLILVSPLCKAPSWSEWFYNKVITNLLYYYGMCGVV 180
Query: 181 KECLLQRYFSTEVRGNGQDPESEIVQACRSLLHERQGSNVWRFLQAINERHDLTEALKKL 240
KE LLQRYFS EVRGN + PES+I QACR LL ERQG NV RFL AI+ R D++ LKKL
Sbjct: 181 KEFLLQRYFSKEVRGNVEIPESDIAQACRRLLDERQGINVLRFLDAIDRRPDISSGLKKL 240
Query: 241 QCRTLIFVGENSQFHDDAVHMTTKLDRRYCALVEVQACGSLVTEEQPHAMLIPMEYFLMG 300
+CRTLIF+G+ S F+ +AVHM LDR YCALVEVQACGS+VTEEQPHAMLIPMEYFLMG
Sbjct: 241 KCRTLIFIGDQSPFYSEAVHMAATLDRGYCALVEVQACGSMVTEEQPHAMLIPMEYFLMG 300
Query: 301 YGLYRPSQLDSSPRSTLNPFCISPELLSPESMGVKLKPIKTRIS 344
YGLYRPS SPRS L+P CISPELLSPESMG+KLKPIKTRIS
Sbjct: 301 YGLYRPSLFSESPRSPLSPSCISPELLSPESMGLKLKPIKTRIS 344
>AT2G19620.1 | chr2:8486131-8488651 REVERSE LENGTH=348
Length = 347
Score = 489 bits (1259), Expect = e-139, Method: Compositional matrix adjust.
Identities = 225/342 (65%), Positives = 277/342 (80%)
Query: 5 SRSVSIDVERISFGGKEHRVRTRYGSVSVSVFGDEDKPALITYPDVALNYMSCFQGLFFC 64
+ +VS+D+E I GGKEH V+T +GSVSV V+GD++KPALITYPDVALNYMSCFQGLF C
Sbjct: 5 NNAVSLDIEEICNGGKEHHVKTCHGSVSVVVYGDQEKPALITYPDVALNYMSCFQGLFLC 64
Query: 65 PEAASLLLHNFCIYHITPQGHELGAAPISSDVPVPSVDELVDQVADVLDFFGLGSVMCLG 124
PEA SLLLHNFCIYHI+P GHE GAAP+ S+ P PSV++L DQ+ +VL+FF L +VMC+G
Sbjct: 65 PEAVSLLLHNFCIYHISPPGHEFGAAPVCSNDPSPSVEDLADQILEVLNFFSLEAVMCMG 124
Query: 125 VTAGAYILTLFATKYRDRVIGLMLVSPLCKAPSWSEWXXXXXXXXXXXXXGSRGLVKECL 184
+TAGAYIL+LFA K+++RV+GL+L+SPLCKAPSWSEW G GL+K+
Sbjct: 125 ITAGAYILSLFAIKHKERVLGLILISPLCKAPSWSEWFYYKVVSNLLYYYGMSGLLKDIF 184
Query: 185 LQRYFSTEVRGNGQDPESEIVQACRSLLHERQGSNVWRFLQAINERHDLTEALKKLQCRT 244
LQRYFS E RG+ + PE ++V CR LL ER GS++ RFL+A+N RHDLT+ LK L+CRT
Sbjct: 185 LQRYFSKEARGSSEVPERDVVHECRRLLGERHGSSLMRFLEAVNRRHDLTDGLKSLKCRT 244
Query: 245 LIFVGENSQFHDDAVHMTTKLDRRYCALVEVQACGSLVTEEQPHAMLIPMEYFLMGYGLY 304
LIFVG+ S FH + +HM T LDR+Y ALVEVQACGS+VTEEQPHAMLIPME+F MG+GLY
Sbjct: 245 LIFVGDQSPFHSETLHMVTALDRKYSALVEVQACGSMVTEEQPHAMLIPMEFFFMGFGLY 304
Query: 305 RPSQLDSSPRSTLNPFCISPELLSPESMGVKLKPIKTRISLK 346
RP ++ SPRS L+P CISPELLSPES+G+KLKPIKTR+ K
Sbjct: 305 RPGRVSDSPRSPLSPSCISPELLSPESLGLKLKPIKTRVPTK 346
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.137 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,497,892
Number of extensions: 308884
Number of successful extensions: 642
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 641
Number of HSP's successfully gapped: 3
Length of query: 347
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 248
Effective length of database: 8,392,385
Effective search space: 2081311480
Effective search space used: 2081311480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 112 (47.8 bits)