BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0192600 Os01g0192600|AK100731
         (347 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0192600  Ndr family protein                                  688   0.0  
Os02g0224800  Ndr family protein                                  564   e-161
Os06g0563000  Ndr family protein                                  549   e-156
Os05g0196200  Ndr family protein                                  194   7e-50

>Os01g0192600 Ndr family protein
          Length = 347

 Score =  688 bits (1775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/347 (96%), Positives = 334/347 (96%)

Query: 1   MGDSSRSVSIDVERISFGGKEHRVRTRYGSVSVSVFGDEDKPALITYPDVALNYMSCFQG 60
           MGDSSRSVSIDVERISFGGKEHRVRTRYGSVSVSVFGDEDKPALITYPDVALNYMSCFQG
Sbjct: 1   MGDSSRSVSIDVERISFGGKEHRVRTRYGSVSVSVFGDEDKPALITYPDVALNYMSCFQG 60

Query: 61  LFFCPEAASLLLHNFCIYHITPQGHELGAAPISSDVPVPSVDELVDQVADVLDFFGLGSV 120
           LFFCPEAASLLLHNFCIYHITPQGHELGAAPISSDVPVPSVDELVDQVADVLDFFGLGSV
Sbjct: 61  LFFCPEAASLLLHNFCIYHITPQGHELGAAPISSDVPVPSVDELVDQVADVLDFFGLGSV 120

Query: 121 MCLGVTAGAYILTLFATKYRDRVIGLMLVSPLCKAPSWSEWXXXXXXXXXXXXXGSRGLV 180
           MCLGVTAGAYILTLFATKYRDRVIGLMLVSPLCKAPSWSEW             GSRGLV
Sbjct: 121 MCLGVTAGAYILTLFATKYRDRVIGLMLVSPLCKAPSWSEWLYNKVLLNLLYYYGSRGLV 180

Query: 181 KECLLQRYFSTEVRGNGQDPESEIVQACRSLLHERQGSNVWRFLQAINERHDLTEALKKL 240
           KECLLQRYFSTEVRGNGQDPESEIVQACRSLLHERQGSNVWRFLQAINERHDLTEALKKL
Sbjct: 181 KECLLQRYFSTEVRGNGQDPESEIVQACRSLLHERQGSNVWRFLQAINERHDLTEALKKL 240

Query: 241 QCRTLIFVGENSQFHDDAVHMTTKLDRRYCALVEVQACGSLVTEEQPHAMLIPMEYFLMG 300
           QCRTLIFVGENSQFHDDAVHMTTKLDRRYCALVEVQACGSLVTEEQPHAMLIPMEYFLMG
Sbjct: 241 QCRTLIFVGENSQFHDDAVHMTTKLDRRYCALVEVQACGSLVTEEQPHAMLIPMEYFLMG 300

Query: 301 YGLYRPSQLDSSPRSTLNPFCISPELLSPESMGVKLKPIKTRISLKV 347
           YGLYRPSQLDSSPRSTLNPFCISPELLSPESMGVKLKPIKTRISLKV
Sbjct: 301 YGLYRPSQLDSSPRSTLNPFCISPELLSPESMGVKLKPIKTRISLKV 347



>Os02g0224800 Ndr family protein
          Length = 348

 Score =  564 bits (1453), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 271/348 (77%), Positives = 300/348 (86%), Gaps = 1/348 (0%)

Query: 1   MGDSSRSV-SIDVERISFGGKEHRVRTRYGSVSVSVFGDEDKPALITYPDVALNYMSCFQ 59
           MGDS  SV SIDVERISFGGKEH + T +G VSV+V+GD DKPAL+TYPD+ALN+MSCFQ
Sbjct: 1   MGDSGGSVVSIDVERISFGGKEHHIHTNHGPVSVAVYGDHDKPALVTYPDIALNHMSCFQ 60

Query: 60  GLFFCPEAASLLLHNFCIYHITPQGHELGAAPISSDVPVPSVDELVDQVADVLDFFGLGS 119
           GL FCPEAASLLLHNFCIYHI+P GHELGAAPIS + P+PSVD+L DQVADVLDFFGLGS
Sbjct: 61  GLLFCPEAASLLLHNFCIYHISPPGHELGAAPISPNAPIPSVDDLADQVADVLDFFGLGS 120

Query: 120 VMCLGVTAGAYILTLFATKYRDRVIGLMLVSPLCKAPSWSEWXXXXXXXXXXXXXGSRGL 179
           VMCLGV+AGAYILTLFA KYRDRV+GL+LVSPLCK P+W+EW             G  GL
Sbjct: 121 VMCLGVSAGAYILTLFAAKYRDRVLGLILVSPLCKPPTWTEWFYNKVASNLLYYYGMCGL 180

Query: 180 VKECLLQRYFSTEVRGNGQDPESEIVQACRSLLHERQGSNVWRFLQAINERHDLTEALKK 239
           VKE LLQRYFS EVRG    PES+IVQACRSLL +RQ  NVWRF+Q +N R+DLTE LK+
Sbjct: 181 VKEGLLQRYFSKEVRGCSDLPESDIVQACRSLLDQRQSMNVWRFVQTMNMRYDLTEDLKQ 240

Query: 240 LQCRTLIFVGENSQFHDDAVHMTTKLDRRYCALVEVQACGSLVTEEQPHAMLIPMEYFLM 299
           LQCRTLIFVGE SQFH +AVHMT+KLDRRYCALVEVQACGSL+TEEQPHAMLIPMEYF M
Sbjct: 241 LQCRTLIFVGEYSQFHTEAVHMTSKLDRRYCALVEVQACGSLITEEQPHAMLIPMEYFFM 300

Query: 300 GYGLYRPSQLDSSPRSTLNPFCISPELLSPESMGVKLKPIKTRISLKV 347
           GYGLYRPSQLD SPRS L+PFCISP+LLSPESMGVKLKPIKTR+ L+V
Sbjct: 301 GYGLYRPSQLDCSPRSPLSPFCISPDLLSPESMGVKLKPIKTRVRLEV 348



>Os06g0563000 Ndr family protein
          Length = 348

 Score =  549 bits (1414), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 261/348 (75%), Positives = 296/348 (85%), Gaps = 1/348 (0%)

Query: 1   MGDSSRSV-SIDVERISFGGKEHRVRTRYGSVSVSVFGDEDKPALITYPDVALNYMSCFQ 59
           MGDS  SV S+DVERISFGGKEH ++T +GSVSV+V+GD DKPAL+TYPD+ALN+MSCFQ
Sbjct: 1   MGDSGGSVVSVDVERISFGGKEHHIQTNHGSVSVAVYGDHDKPALVTYPDIALNHMSCFQ 60

Query: 60  GLFFCPEAASLLLHNFCIYHITPQGHELGAAPISSDVPVPSVDELVDQVADVLDFFGLGS 119
           GL FCPEA+SLLLHNFCIYHI+P GHELGAAP+S   PV SVDEL DQV+DVLDFFGLG 
Sbjct: 61  GLLFCPEASSLLLHNFCIYHISPPGHELGAAPVSPSSPVASVDELADQVSDVLDFFGLGP 120

Query: 120 VMCLGVTAGAYILTLFATKYRDRVIGLMLVSPLCKAPSWSEWXXXXXXXXXXXXXGSRGL 179
           VMCLGVTAGAYILTLFATKYR+RV+GL+LVSPLC+ PSW+EW             G   +
Sbjct: 121 VMCLGVTAGAYILTLFATKYRERVLGLILVSPLCRTPSWTEWFHNKVMSNLLYYYGMCNM 180

Query: 180 VKECLLQRYFSTEVRGNGQDPESEIVQACRSLLHERQGSNVWRFLQAINERHDLTEALKK 239
           VK+CLLQRYFS  V+G    PES+IVQA RS L +RQ  NVWRF+  INERHDLTE+LK+
Sbjct: 181 VKDCLLQRYFSKGVQGCSAVPESDIVQASRSFLDQRQSMNVWRFIHTINERHDLTESLKE 240

Query: 240 LQCRTLIFVGENSQFHDDAVHMTTKLDRRYCALVEVQACGSLVTEEQPHAMLIPMEYFLM 299
           LQCRTLIFVG+NSQFH +AVHMT+KLD RY ALVEVQ CGS+VTEEQPHAML+P+EYFLM
Sbjct: 241 LQCRTLIFVGQNSQFHAEAVHMTSKLDERYSALVEVQGCGSVVTEEQPHAMLMPLEYFLM 300

Query: 300 GYGLYRPSQLDSSPRSTLNPFCISPELLSPESMGVKLKPIKTRISLKV 347
           GYGLYRPSQ+  SPRS LNPFCISPELLSPESMGVKLKPIKTR +L+V
Sbjct: 301 GYGLYRPSQISCSPRSPLNPFCISPELLSPESMGVKLKPIKTRANLEV 348



>Os05g0196200 Ndr family protein
          Length = 127

 Score =  194 bits (494), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 89/104 (85%), Positives = 98/104 (94%)

Query: 13  ERISFGGKEHRVRTRYGSVSVSVFGDEDKPALITYPDVALNYMSCFQGLFFCPEAASLLL 72
           ERISFGGKEH+VRTR GS+SV+++GDEDKPALITYPD+ALN+MSCFQGL FCPE ASLLL
Sbjct: 19  ERISFGGKEHQVRTRCGSLSVAIYGDEDKPALITYPDIALNHMSCFQGLLFCPEVASLLL 78

Query: 73  HNFCIYHITPQGHELGAAPISSDVPVPSVDELVDQVADVLDFFG 116
           HNFCIYHI PQGHELGAAPI SDVPVPSV++L DQVADVLDFFG
Sbjct: 79  HNFCIYHINPQGHELGAAPIPSDVPVPSVEDLADQVADVLDFFG 122



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.137    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,644,425
Number of extensions: 479902
Number of successful extensions: 1104
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1104
Number of HSP's successfully gapped: 4
Length of query: 347
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 245
Effective length of database: 11,709,973
Effective search space: 2868943385
Effective search space used: 2868943385
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)