Os06g0563000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ndr family protein.
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Os06g0563000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ndr family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.39 | 0.276 | 10.7 | -0.808 | 0.114 | 0.0841 | -1.01 | 3.12 | -0.123 | 13.4 | 0.8829 | 1372 | -- | -- |
| 40.49 | 0.299 | 10.6 | -0.401 | 0.0385 | -0.168 | 0.814 | -- | -0.0159 | 3.82 | 0.8829 | 1372 | -- | -- |
| 34.9 | 0.275 | 10.7 | -0.779 | 0.169 | -0.0691 | -- | 2.81 | -0.101 | 10.7 | 1.133 | 1507 | -- | -- |
| 42.33 | 0.305 | 10.6 | -0.416 | 0.0628 | -0.195 | -- | -- | -0.024 | 1.8 | 0.2399 | 4597 | -- | -- |
| 36.31 | 0.281 | 10.7 | -0.816 | -- | -0.0787 | -- | 2.97 | -0.114 | -- | 0.9699 | 1526 | -- | -- |
| 42.52 | 0.306 | 10.6 | -0.379 | 0.154 | -- | -0.536 | -- | -0.0121 | 13 | -- | -- | -- | -- |
| 43.21 | 0.308 | 10.6 | -0.401 | 0.179 | -- | -- | -- | -0.0169 | 10.8 | -- | -- | -- | -- |
| 41.44 | 0.3 | 10.6 | -0.5 | -- | 0.376 | -- | -- | 0.129 | -- | 48.32 | 25552 | -- | -- |
| 45.68 | 0.315 | 10.6 | -- | 0.393 | 0.41 | -- | -- | 0.0553 | 13.7 | 44.13 | 389 | -- | -- |
| 45.21 | 0.314 | 10.6 | -0.405 | -- | -- | -- | -- | -0.018 | -- | -- | -- | -- | -- |
| 47.45 | 0.322 | 10.6 | -- | 0.183 | -- | -- | -- | 0.0278 | 10.9 | -- | -- | -- | -- |
| 47.11 | 0.32 | 10.6 | -- | -- | 0.243 | -- | -- | 0.0968 | -- | 43.57 | 21243 | -- | -- |
| 49.52 | 0.328 | 10.6 | -- | -- | -- | -- | -- | 0.0269 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.00 | wind | 5 | 14400 | > th | dose independent | rect. | 14 | 3 |
| 4 | 34.05 | wind | 5 | 14400 | < th | dose independent | rect. | 11 | 6 |
| 7 | 34.10 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 12 |
| 14 | 34.17 | radiation | 1 | 720 | < th | dose dependent | rect. | 22 | 21 |
| 16 | 34.22 | wind | 3 | 14400 | > th | dose dependent | rect. | 11 | 6 |
| 22 | 34.28 | wind | 3 | 14400 | > th | dose dependent | rect. | 14 | 2 |
| 29 | 34.32 | radiation | 1 | 720 | < th | dose dependent | rect. | 22 | 19 |
| 37 | 34.41 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 14 |
| 41 | 34.45 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 5 |
| 45 | 34.46 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 10 |
| 65 | 34.58 | radiation | 1 | 1440 | < th | dose dependent | sin | 15 | NA |
| 91 | 34.70 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 23 |
| 100 | 34.74 | radiation | 1 | 1440 | > th | dose independent | rect. | 15 | 4 |
| 139 | 34.83 | radiation | 1 | 720 | < th | dose dependent | sin | 2 | NA |
| 140 | 34.83 | wind | 9 | 14400 | < th | dose dependent | rect. | 11 | 5 |
| 142 | 34.84 | radiation | 1 | 720 | < th | dose independent | rect. | 22 | 21 |
| 146 | 34.85 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 13 |
| 159 | 34.87 | radiation | 1 | 1440 | > th | dose independent | sin | 15 | NA |
| 169 | 34.90 | radiation | 1 | 1440 | < th | dose independent | rect. | 15 | 5 |
| 176 | 34.91 | radiation | 1 | 1440 | < th | dose independent | rect. | 15 | 10 |
| 188 | 34.92 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 210 | 34.96 | radiation | 1 | 720 | < th | dose independent | rect. | 22 | 19 |
| 220 | 34.96 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 15 |
| 236 | 34.98 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 255 | 34.98 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 20 |
| 293 | 34.99 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 299 | 35.01 | radiation | 1 | 720 | < th | dose independent | rect. | 4 | 13 |
| 331 | 35.03 | radiation | 1 | 1440 | > th | dose independent | rect. | 7 | 23 |
| 339 | 35.04 | radiation | 1 | 1440 | < th | dose independent | sin | 15 | NA |
| 376 | 35.07 | radiation | 1 | 1440 | > th | dose independent | rect. | 7 | 12 |
| 404 | 35.13 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 23 |
| 442 | 35.18 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 11 |
| 472 | 35.20 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 476 | 35.21 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 13 |
| 624 | 35.35 | radiation | 1 | 720 | < th | dose independent | sin | 2 | NA |
| 668 | 35.38 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 699 | 35.42 | humidity | 80 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 712 | 35.43 | radiation | 1 | 1440 | > th | dose independent | no | NA | NA |
| 797 | 35.45 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 828 | 35.48 | radiation | 1 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 830 | 35.49 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 3 |
| 831 | 35.49 | radiation | 1 | 1440 | < th | dose independent | rect. | 3 | 16 |
| 858 | 35.50 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 939 | 35.55 | radiation | 1 | 1440 | < th | dose independent | rect. | 15 | 23 |