BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0563000 Os06g0563000|AK099669
(348 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G11790.1 | chr5:3799682-3802496 FORWARD LENGTH=345 494 e-140
AT5G56750.1 | chr5:22957986-22960606 FORWARD LENGTH=347 494 e-140
AT2G19620.1 | chr2:8486131-8488651 REVERSE LENGTH=348 475 e-134
>AT5G11790.1 | chr5:3799682-3802496 FORWARD LENGTH=345
Length = 344
Score = 494 bits (1272), Expect = e-140, Method: Compositional matrix adjust.
Identities = 236/333 (70%), Positives = 275/333 (82%), Gaps = 1/333 (0%)
Query: 14 ERISFGGKEHHIQTNHGSVSVAVYGDHDKPALVTYPDIALNHMSCFQGLLFCPEASSLLL 73
E +S GG+EH ++T +G V VAV GD DKPAL+TYPDIALN+M CFQGLLFCPEASSLLL
Sbjct: 13 EALSLGGQEHLVETTYGPVCVAVCGDPDKPALITYPDIALNYMFCFQGLLFCPEASSLLL 72
Query: 74 HNFCIYHISPPGHELGXXXXXXXXXXXXXDELADQVSDVLDFFGLGPVMCLGVTAGAYIL 133
HNFCIYHISP GHELG D+LADQ+ +VL++FGLG VMC+GVTAGAYIL
Sbjct: 73 HNFCIYHISPLGHELGAPMISVDAPLLSADDLADQIVEVLNYFGLGAVMCMGVTAGAYIL 132
Query: 134 TLFATKYRERVLGLILVSPLCRTPSWTEWFHNKVMSNLLYYYGMCNMVKDCLLQRYFSKG 193
TLFA KYR+RVLGLILVSPLC+ PSW+EW NKVMSNLLYYYG C +VK+ LL+RYFSK
Sbjct: 133 TLFAMKYRQRVLGLILVSPLCQAPSWSEWLCNKVMSNLLYYYGTCGVVKEMLLKRYFSKE 192
Query: 194 VQGCSAVPESDIVQASRSFLDQRQSMNVWRFIHTINERHDLTESLKELQCRTLIFVGQNS 253
V+G VPESDIVQ R L +RQS NVWRF+ IN R DL+E L++LQCRTLIF+G+NS
Sbjct: 193 VRGNGHVPESDIVQECRRLLSERQSTNVWRFLEAINGRVDLSEGLRKLQCRTLIFIGENS 252
Query: 254 QFHAEAVHMTSKLDERYSALVEVQGCGSVVTEEQPHAMLMPLEYFLMGYGLYRPSQISCS 313
+H+EAVHMT+KLD RY ALVEVQG GS+V+EEQP AM++P+EYFLMGYGLYRP+Q S S
Sbjct: 253 AYHSEAVHMTTKLDRRYGALVEVQGSGSLVSEEQPQAMIIPMEYFLMGYGLYRPTQ-SVS 311
Query: 314 PRSPLNPFCISPELLSPESMGVKLKPIKTRANL 346
PRSPL+P ISPELLSPE+MG+KLKPIKTR L
Sbjct: 312 PRSPLSPTRISPELLSPENMGLKLKPIKTRLAL 344
>AT5G56750.1 | chr5:22957986-22960606 FORWARD LENGTH=347
Length = 346
Score = 494 bits (1271), Expect = e-140, Method: Compositional matrix adjust.
Identities = 232/328 (70%), Positives = 270/328 (82%)
Query: 16 ISFGGKEHHIQTNHGSVSVAVYGDHDKPALVTYPDIALNHMSCFQGLLFCPEASSLLLHN 75
I GGKEH ++T G VSV VYGD +KPAL+TYPD+ALNHMSCFQGL FCPEA+SLLLHN
Sbjct: 15 IYLGGKEHRVKTASGVVSVIVYGDREKPALITYPDLALNHMSCFQGLFFCPEAASLLLHN 74
Query: 76 FCIYHISPPGHELGXXXXXXXXXXXXXDELADQVSDVLDFFGLGPVMCLGVTAGAYILTL 135
FCIYHISPPGHELG + LADQ+ +VL+FFGLG VMC+GVTAGAYILTL
Sbjct: 75 FCIYHISPPGHELGAAPICPNDSVPSAENLADQILEVLNFFGLGVVMCMGVTAGAYILTL 134
Query: 136 FATKYRERVLGLILVSPLCRTPSWTEWFHNKVMSNLLYYYGMCNMVKDCLLQRYFSKGVQ 195
FA K+RERVLGLILVSPLC+ PSW+EWF+NKV++NLLYYYGMC +VK+ LLQRYFSK V+
Sbjct: 135 FAMKHRERVLGLILVSPLCKAPSWSEWFYNKVITNLLYYYGMCGVVKEFLLQRYFSKEVR 194
Query: 196 GCSAVPESDIVQASRSFLDQRQSMNVWRFIHTINERHDLTESLKELQCRTLIFVGQNSQF 255
G +PESDI QA R LD+RQ +NV RF+ I+ R D++ LK+L+CRTLIF+G S F
Sbjct: 195 GNVEIPESDIAQACRRLLDERQGINVLRFLDAIDRRPDISSGLKKLKCRTLIFIGDQSPF 254
Query: 256 HAEAVHMTSKLDERYSALVEVQGCGSVVTEEQPHAMLMPLEYFLMGYGLYRPSQISCSPR 315
++EAVHM + LD Y ALVEVQ CGS+VTEEQPHAML+P+EYFLMGYGLYRPS S SPR
Sbjct: 255 YSEAVHMAATLDRGYCALVEVQACGSMVTEEQPHAMLIPMEYFLMGYGLYRPSLFSESPR 314
Query: 316 SPLNPFCISPELLSPESMGVKLKPIKTR 343
SPL+P CISPELLSPESMG+KLKPIKTR
Sbjct: 315 SPLSPSCISPELLSPESMGLKLKPIKTR 342
>AT2G19620.1 | chr2:8486131-8488651 REVERSE LENGTH=348
Length = 347
Score = 475 bits (1222), Expect = e-134, Method: Compositional matrix adjust.
Identities = 218/331 (65%), Positives = 264/331 (79%)
Query: 14 ERISFGGKEHHIQTNHGSVSVAVYGDHDKPALVTYPDIALNHMSCFQGLLFCPEASSLLL 73
E I GGKEHH++T HGSVSV VYGD +KPAL+TYPD+ALN+MSCFQGL CPEA SLLL
Sbjct: 13 EEICNGGKEHHVKTCHGSVSVVVYGDQEKPALITYPDVALNYMSCFQGLFLCPEAVSLLL 72
Query: 74 HNFCIYHISPPGHELGXXXXXXXXXXXXXDELADQVSDVLDFFGLGPVMCLGVTAGAYIL 133
HNFCIYHISPPGHE G ++LADQ+ +VL+FF L VMC+G+TAGAYIL
Sbjct: 73 HNFCIYHISPPGHEFGAAPVCSNDPSPSVEDLADQILEVLNFFSLEAVMCMGITAGAYIL 132
Query: 134 TLFATKYRERVLGLILVSPLCRTPSWTEWFHNKVMSNLLYYYGMCNMVKDCLLQRYFSKG 193
+LFA K++ERVLGLIL+SPLC+ PSW+EWF+ KV+SNLLYYYGM ++KD LQRYFSK
Sbjct: 133 SLFAIKHKERVLGLILISPLCKAPSWSEWFYYKVVSNLLYYYGMSGLLKDIFLQRYFSKE 192
Query: 194 VQGCSAVPESDIVQASRSFLDQRQSMNVWRFIHTINERHDLTESLKELQCRTLIFVGQNS 253
+G S VPE D+V R L +R ++ RF+ +N RHDLT+ LK L+CRTLIFVG S
Sbjct: 193 ARGSSEVPERDVVHECRRLLGERHGSSLMRFLEAVNRRHDLTDGLKSLKCRTLIFVGDQS 252
Query: 254 QFHAEAVHMTSKLDERYSALVEVQGCGSVVTEEQPHAMLMPLEYFLMGYGLYRPSQISCS 313
FH+E +HM + LD +YSALVEVQ CGS+VTEEQPHAML+P+E+F MG+GLYRP ++S S
Sbjct: 253 PFHSETLHMVTALDRKYSALVEVQACGSMVTEEQPHAMLIPMEFFFMGFGLYRPGRVSDS 312
Query: 314 PRSPLNPFCISPELLSPESMGVKLKPIKTRA 344
PRSPL+P CISPELLSPES+G+KLKPIKTR
Sbjct: 313 PRSPLSPSCISPELLSPESLGLKLKPIKTRV 343
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.138 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,336,357
Number of extensions: 294283
Number of successful extensions: 582
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 581
Number of HSP's successfully gapped: 3
Length of query: 348
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 249
Effective length of database: 8,392,385
Effective search space: 2089703865
Effective search space used: 2089703865
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 112 (47.8 bits)