BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0224800 Os02g0224800|AK066213
(348 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G56750.1 | chr5:22957986-22960606 FORWARD LENGTH=347 501 e-142
AT5G11790.1 | chr5:3799682-3802496 FORWARD LENGTH=345 488 e-138
AT2G19620.1 | chr2:8486131-8488651 REVERSE LENGTH=348 472 e-133
>AT5G56750.1 | chr5:22957986-22960606 FORWARD LENGTH=347
Length = 346
Score = 501 bits (1289), Expect = e-142, Method: Compositional matrix adjust.
Identities = 241/344 (70%), Positives = 276/344 (80%), Gaps = 1/344 (0%)
Query: 1 MGDSGGSVVSIDVERISFGGKEHHIHTNHGPVSVAVYGDHDKPALVTYPDIALNHMSCFQ 60
M DS G+V S+DV I GGKEH + T G VSV VYGD +KPAL+TYPD+ALNHMSCFQ
Sbjct: 1 MTDSYGAV-SVDVGTIYLGGKEHRVKTASGVVSVIVYGDREKPALITYPDLALNHMSCFQ 59
Query: 61 GLLFCPEAASLLLHNFCIYHISPPGHELGXXXXXXXXXXXXXXXXXXXXXXXXXFFGLGS 120
GL FCPEAASLLLHNFCIYHISPPGHELG FFGLG
Sbjct: 60 GLFFCPEAASLLLHNFCIYHISPPGHELGAAPICPNDSVPSAENLADQILEVLNFFGLGV 119
Query: 121 VMCLGVSAGAYILTLFAAKYRDRVLGLILVSPLCKPPTWTEWFYNKVASNLLYYYGMCGL 180
VMC+GV+AGAYILTLFA K+R+RVLGLILVSPLCK P+W+EWFYNKV +NLLYYYGMCG+
Sbjct: 120 VMCMGVTAGAYILTLFAMKHRERVLGLILVSPLCKAPSWSEWFYNKVITNLLYYYGMCGV 179
Query: 181 VKEGLLQRYFSKEVRGCSDLPESDIVQACRSLLDQRQSMNVWRFVQTMNMRYDLTEDLKQ 240
VKE LLQRYFSKEVRG ++PESDI QACR LLD+RQ +NV RF+ ++ R D++ LK+
Sbjct: 180 VKEFLLQRYFSKEVRGNVEIPESDIAQACRRLLDERQGINVLRFLDAIDRRPDISSGLKK 239
Query: 241 LQCRTLIFVGEYSQFHTEAVHMTSKLDRRYCALVEVQACGSLITEEQPHAMLIPMEYFFM 300
L+CRTLIF+G+ S F++EAVHM + LDR YCALVEVQACGS++TEEQPHAMLIPMEYF M
Sbjct: 240 LKCRTLIFIGDQSPFYSEAVHMAATLDRGYCALVEVQACGSMVTEEQPHAMLIPMEYFLM 299
Query: 301 GYGLYRPSQLDCSPRSPLSPFCISPDLLSPESMGVKLKPIKTRV 344
GYGLYRPS SPRSPLSP CISP+LLSPESMG+KLKPIKTR+
Sbjct: 300 GYGLYRPSLFSESPRSPLSPSCISPELLSPESMGLKLKPIKTRI 343
>AT5G11790.1 | chr5:3799682-3802496 FORWARD LENGTH=345
Length = 344
Score = 488 bits (1256), Expect = e-138, Method: Compositional matrix adjust.
Identities = 238/346 (68%), Positives = 275/346 (79%), Gaps = 2/346 (0%)
Query: 1 MGDSGGSVVSIDVERISFGGKEHHIHTNHGPVSVAVYGDHDKPALVTYPDIALNHMSCFQ 60
M DS SV SID+E +S GG+EH + T +GPV VAV GD DKPAL+TYPDIALN+M CFQ
Sbjct: 1 MADSSDSV-SIDMEALSLGGQEHLVETTYGPVCVAVCGDPDKPALITYPDIALNYMFCFQ 59
Query: 61 GLLFCPEAASLLLHNFCIYHISPPGHELGXXXXXXXXXXXXXXXXXXXXXXXXXFFGLGS 120
GLLFCPEA+SLLLHNFCIYHISP GHELG +FGLG+
Sbjct: 60 GLLFCPEASSLLLHNFCIYHISPLGHELGAPMISVDAPLLSADDLADQIVEVLNYFGLGA 119
Query: 121 VMCLGVSAGAYILTLFAAKYRDRVLGLILVSPLCKPPTWTEWFYNKVASNLLYYYGMCGL 180
VMC+GV+AGAYILTLFA KYR RVLGLILVSPLC+ P+W+EW NKV SNLLYYYG CG+
Sbjct: 120 VMCMGVTAGAYILTLFAMKYRQRVLGLILVSPLCQAPSWSEWLCNKVMSNLLYYYGTCGV 179
Query: 181 VKEGLLQRYFSKEVRGCSDLPESDIVQACRSLLDQRQSMNVWRFVQTMNMRYDLTEDLKQ 240
VKE LL+RYFSKEVRG +PESDIVQ CR LL +RQS NVWRF++ +N R DL+E L++
Sbjct: 180 VKEMLLKRYFSKEVRGNGHVPESDIVQECRRLLSERQSTNVWRFLEAINGRVDLSEGLRK 239
Query: 241 LQCRTLIFVGEYSQFHTEAVHMTSKLDRRYCALVEVQACGSLITEEQPHAMLIPMEYFFM 300
LQCRTLIF+GE S +H+EAVHMT+KLDRRY ALVEVQ GSL++EEQP AM+IPMEYF M
Sbjct: 240 LQCRTLIFIGENSAYHSEAVHMTTKLDRRYGALVEVQGSGSLVSEEQPQAMIIPMEYFLM 299
Query: 301 GYGLYRPSQLDCSPRSPLSPFCISPDLLSPESMGVKLKPIKTRVRL 346
GYGLYRP+Q SPRSPLSP ISP+LLSPE+MG+KLKPIKTR+ L
Sbjct: 300 GYGLYRPTQ-SVSPRSPLSPTRISPELLSPENMGLKLKPIKTRLAL 344
>AT2G19620.1 | chr2:8486131-8488651 REVERSE LENGTH=348
Length = 347
Score = 472 bits (1214), Expect = e-133, Method: Compositional matrix adjust.
Identities = 219/339 (64%), Positives = 266/339 (78%)
Query: 6 GSVVSIDVERISFGGKEHHIHTNHGPVSVAVYGDHDKPALVTYPDIALNHMSCFQGLLFC 65
+ VS+D+E I GGKEHH+ T HG VSV VYGD +KPAL+TYPD+ALN+MSCFQGL C
Sbjct: 5 NNAVSLDIEEICNGGKEHHVKTCHGSVSVVVYGDQEKPALITYPDVALNYMSCFQGLFLC 64
Query: 66 PEAASLLLHNFCIYHISPPGHELGXXXXXXXXXXXXXXXXXXXXXXXXXFFGLGSVMCLG 125
PEA SLLLHNFCIYHISPPGHE G FF L +VMC+G
Sbjct: 65 PEAVSLLLHNFCIYHISPPGHEFGAAPVCSNDPSPSVEDLADQILEVLNFFSLEAVMCMG 124
Query: 126 VSAGAYILTLFAAKYRDRVLGLILVSPLCKPPTWTEWFYNKVASNLLYYYGMCGLVKEGL 185
++AGAYIL+LFA K+++RVLGLIL+SPLCK P+W+EWFY KV SNLLYYYGM GL+K+
Sbjct: 125 ITAGAYILSLFAIKHKERVLGLILISPLCKAPSWSEWFYYKVVSNLLYYYGMSGLLKDIF 184
Query: 186 LQRYFSKEVRGCSDLPESDIVQACRSLLDQRQSMNVWRFVQTMNMRYDLTEDLKQLQCRT 245
LQRYFSKE RG S++PE D+V CR LL +R ++ RF++ +N R+DLT+ LK L+CRT
Sbjct: 185 LQRYFSKEARGSSEVPERDVVHECRRLLGERHGSSLMRFLEAVNRRHDLTDGLKSLKCRT 244
Query: 246 LIFVGEYSQFHTEAVHMTSKLDRRYCALVEVQACGSLITEEQPHAMLIPMEYFFMGYGLY 305
LIFVG+ S FH+E +HM + LDR+Y ALVEVQACGS++TEEQPHAMLIPME+FFMG+GLY
Sbjct: 245 LIFVGDQSPFHSETLHMVTALDRKYSALVEVQACGSMVTEEQPHAMLIPMEFFFMGFGLY 304
Query: 306 RPSQLDCSPRSPLSPFCISPDLLSPESMGVKLKPIKTRV 344
RP ++ SPRSPLSP CISP+LLSPES+G+KLKPIKTRV
Sbjct: 305 RPGRVSDSPRSPLSPSCISPELLSPESLGLKLKPIKTRV 343
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.140 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,550,985
Number of extensions: 302125
Number of successful extensions: 860
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 856
Number of HSP's successfully gapped: 3
Length of query: 348
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 249
Effective length of database: 8,392,385
Effective search space: 2089703865
Effective search space used: 2089703865
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 112 (47.8 bits)