BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0561200 Os06g0561200|AK120422
(627 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0561200 Similar to Potassium/proton antiporter-like pr... 932 0.0
Os03g0127900 Sodium/hydrogen exchanger family protein 263 4e-70
Os04g0682800 Sodium/hydrogen exchanger family protein 110 3e-24
Os12g0617800 Sodium/hydrogen exchanger family protein 100 4e-21
>Os06g0561200 Similar to Potassium/proton antiporter-like protein
Length = 627
Score = 932 bits (2408), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 485/531 (91%), Positives = 485/531 (91%)
Query: 97 KEGSLAEMIDRALEKEFPESEGEQGGGEKDPGSFNNTVAEKQGVLETVARRVTKKNETKD 156
KEGSLAEMIDRALEKEFPESEGEQGGGEKDPGSFNNTVAEKQGVLETVARRVTKKNETKD
Sbjct: 97 KEGSLAEMIDRALEKEFPESEGEQGGGEKDPGSFNNTVAEKQGVLETVARRVTKKNETKD 156
Query: 157 NKSFPFKEVFLDRPEQEDVPTLIDRKDNVFIISNPKSKYPVLQLDLRLISDLVVVIVSAT 216
NKSFPFKEVFLDRPEQEDVPTLIDRKDNVFIISNPKSKYPVLQLDLRLISDLVVVIVSAT
Sbjct: 157 NKSFPFKEVFLDRPEQEDVPTLIDRKDNVFIISNPKSKYPVLQLDLRLISDLVVVIVSAT 216
Query: 217 FGGIAFACLGQPVITGYLLAGSIIGPGGFSFVSEMVQVETVAQFGVIFLLFALGLEFSTA 276
FGGIAFACLGQPVITGYLLAGSIIGPGGFSFVSEMVQVETVAQFGVIFLLFALGLEFSTA
Sbjct: 217 FGGIAFACLGQPVITGYLLAGSIIGPGGFSFVSEMVQVETVAQFGVIFLLFALGLEFSTA 276
Query: 277 KXXXXXXXXXXXXXXQIILFMLLCGISATLCGGKTKEGVFVGVLLSMSSTAVVLKFLMER 336
K QIILFMLLCGISATLCGGKTKEGVFVGVLLSMSSTAVVLKFLMER
Sbjct: 277 KLRVVRAVAVVGGLLQIILFMLLCGISATLCGGKTKEGVFVGVLLSMSSTAVVLKFLMER 336
Query: 337 NSINALHGQVTVGTLILQDCAVGLLFALLPILSGASGLLQGVASMAKXXXXXXXXXXXXX 396
NSINALHGQVTVGTLILQDCAVGLLFALLPILSGASGLLQGVASMAK
Sbjct: 337 NSINALHGQVTVGTLILQDCAVGLLFALLPILSGASGLLQGVASMAKSLVVLITFLTILS 396
Query: 397 XXXRTGVPWFLKLMISLSSQTNELYQLAAVAFCLLFAWCSDKLGLSLELGSFAAGVMIST 456
RTGVPWFLKLMISLSSQTNELYQLAAVAFCLLFAWCSDKLGLSLELGSFAAGVMIST
Sbjct: 397 ILSRTGVPWFLKLMISLSSQTNELYQLAAVAFCLLFAWCSDKLGLSLELGSFAAGVMIST 456
Query: 457 TDLAQHTLEQIEPIRNFFAALFLASIGMLINVHFLWNHVDILLAAVILVITVKTFIVAVV 516
TDLAQHTLEQIEPIRNFFAALFLASIGMLINVHFLWNHVDILLAAVILVITVKTFIVAVV
Sbjct: 457 TDLAQHTLEQIEPIRNFFAALFLASIGMLINVHFLWNHVDILLAAVILVITVKTFIVAVV 516
Query: 517 VKGFGYSNKTSLLVGMSLAQIGEFAFVLLSRASSIHLIEGKXXXXXXXXXXXXXXXXPLL 576
VKGFGYSNKTSLLVGMSLAQIGEFAFVLLSRASSIHLIEGK PLL
Sbjct: 517 VKGFGYSNKTSLLVGMSLAQIGEFAFVLLSRASSIHLIEGKLYLLLLGTTALSLVTTPLL 576
Query: 577 FKMIPAVVHLGVLLRWFSVDSNQVELGLKSDGLRIDSGKRINLIVQGSHDS 627
FKMIPAVVHLGVLLRWFSVDSNQVELGLKSDGLRIDSGKRINLIVQGSHDS
Sbjct: 577 FKMIPAVVHLGVLLRWFSVDSNQVELGLKSDGLRIDSGKRINLIVQGSHDS 627
>Os03g0127900 Sodium/hydrogen exchanger family protein
Length = 219
Score = 263 bits (671), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 142/196 (72%), Positives = 160/196 (81%)
Query: 403 VPWFLKLMISLSSQTNELYQLAAVAFCLLFAWCSDKLGLSLELGSFAAGVMISTTDLAQH 462
VP FLKLMI LSSQTNELYQLA+VAFCLL AWCSD LGLSLELGSF AGVMISTTD A H
Sbjct: 7 VPRFLKLMIQLSSQTNELYQLASVAFCLLLAWCSDYLGLSLELGSFLAGVMISTTDFAHH 66
Query: 463 TLEQIEPIRNFFAALFLASIGMLINVHFLWNHVDILLAAVILVITVKTFIVAVVVKGFGY 522
TLEQ+EPIRN FAALFLASIGMLI+V FLWNHVDILLAAVILVI VK+ +V VVVK FGY
Sbjct: 67 TLEQVEPIRNLFAALFLASIGMLIHVKFLWNHVDILLAAVILVIIVKSVVVTVVVKAFGY 126
Query: 523 SNKTSLLVGMSLAQIGEFAFVLLSRASSIHLIEGKXXXXXXXXXXXXXXXXPLLFKMIPA 582
S +T+ +VG+SLAQIGEFAFVLLSRAS +HL+ GK PL+FK+IP
Sbjct: 127 SIRTAFVVGLSLAQIGEFAFVLLSRASHLHLVGGKMYLLLLGTTALSLVTTPLIFKLIPV 186
Query: 583 VVHLGVLLRWFSVDSN 598
V+HLG+L+RWF +S+
Sbjct: 187 VMHLGILMRWFPSESS 202
>Os04g0682800 Sodium/hydrogen exchanger family protein
Length = 1154
Score = 110 bits (275), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 99/332 (29%), Positives = 160/332 (48%), Gaps = 15/332 (4%)
Query: 226 GQPVITGYLLAGSIIGPGGFSFVSEMVQVETVAQFGVIFLLFALGLEFSTAKXXXXXXXX 285
G PV+ GYL AG +IGP G S + + + +A+FGV+FLLF +GLE S +
Sbjct: 573 GSPVL-GYLAAGVLIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYV 631
Query: 286 XXXXXXQIILFMLLCGISA----TLCGGKTKEGVFVGVLLSMSSTAVVLKFLMERNSINA 341
Q++ G+ A L G + +G L++SSTAVVL+ L ER +
Sbjct: 632 FGLGSAQVLATTAAVGMIAHRFAVLPG---PAAIVIGSGLALSSTAVVLQVLQERGESTS 688
Query: 342 LHGQVTVGTLILQDCAVGLLFALLPILSGAS---GLLQGVASMAKXXXXXXXXXXXXXXX 398
HG+ T L+ QD AV +L L+P++S S G+ G ++A+
Sbjct: 689 RHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGV--GFQAIAEAMGMAAVKAIAAITA 746
Query: 399 XRTGVPWFLKLMISLSSQTNELYQLAAVAFCLLF--AWCSDKLGLSLELGSFAAGVMIST 456
G L+ + ++ +A ++F + + + GLS+ LG+F AG++++
Sbjct: 747 IIAGGRLLLRPIYKQIAENRNAEIFSANTLLVIFGTSLLTARAGLSMALGAFLAGLLLAE 806
Query: 457 TDLAQHTLEQIEPIRNFFAALFLASIGMLINVHFLWNHVDILLAAVILVITVKTFIVAVV 516
T+ + I P R LF ++GM I+ L ++ + + L+I KT +V +
Sbjct: 807 TEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPAISVILGLLIIGKTMLVTFI 866
Query: 517 VKGFGYSNKTSLLVGMSLAQIGEFAFVLLSRA 548
+ FG S ++ VG+ LA GEFAFV A
Sbjct: 867 GRVFGISTIAAVRVGLLLAPGGEFAFVAFGEA 898
>Os12g0617800 Sodium/hydrogen exchanger family protein
Length = 791
Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 93/362 (25%), Positives = 159/362 (43%), Gaps = 38/362 (10%)
Query: 221 AFACLGQPVITGYLLAGSIIGPGGFSFVSEMVQVETVAQFGVIFLLFALGLEFSTAKXXX 280
AF + I G+ AG ++ F + + V+ ++++G++FLLF +GLE S ++
Sbjct: 112 AFRVVKASPILGFFCAGVVLNQ--FGLIRNLTDVKLLSEWGILFLLFEMGLELSLSRLKA 169
Query: 281 XXXXXXXXXXXQIILFML--------------------LCGISATLCGGKT-KEGVFVGV 319
Q++L L L L ++ E + +G
Sbjct: 170 LARYAFGMGLPQVLLSTLAFTAFELPPNGAIGTKILQFLFDSRPDLVNIRSVDEAIVIGA 229
Query: 320 LLSMSSTAVVLKFLMERNSINALHGQVTVGTLILQDCAVGLLFALLPILSGASGLLQGVA 379
LS+SS+A VL+ L E+ + G T+G L+LQD AV L +LP+L + + Q V
Sbjct: 230 ALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQNVVEQSVW 289
Query: 380 SMAKXXXXXXXXXXXXXXXXRTGVPWFLKLMISLSSQTNELYQLAAVAFCLLF----AWC 435
M G + ++ + +++ A VA CLL +
Sbjct: 290 PM---LLAESLKALGGLGLLSLGGKYLIRRIFEFVAESRS--SEAFVALCLLTVSGTSLL 344
Query: 436 SDKLGLSLELGSFAAGVMISTTDLAQHTLEQIEPIRNFFAALFLASIGMLINVHFL---W 492
+ LG S LG+F AG +++ T+ I P R LF + G I++ L W
Sbjct: 345 TQWLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGTSIDMELLIREW 404
Query: 493 NHVDILLAAVILVITVKTFIVAVVVKGFGYSNKTSLLVGMSLAQIGEFAFVLLSRASSIH 552
+V LL +I +KT I+ + G + + S+ +G+ L+Q GEF FV+ S A+ +
Sbjct: 405 PNVLSLLGGLI---AIKTLIITAIGPRVGLTLQESVRIGLLLSQGGEFGFVVFSLANRLG 461
Query: 553 LI 554
++
Sbjct: 462 VL 463
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.139 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,104,611
Number of extensions: 504234
Number of successful extensions: 1311
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1305
Number of HSP's successfully gapped: 4
Length of query: 627
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 520
Effective length of database: 11,448,903
Effective search space: 5953429560
Effective search space used: 5953429560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 159 (65.9 bits)