Os04g0682800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Sodium/hydrogen exchanger family protein.
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Os04g0682800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Sodium/hydrogen exchanger family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.69 | 0.273 | 11.4 | 0.73 | 0.769 | -0.791 | -0.402 | 4.65 | 0.00104 | 13.5 | 25.55 | 4239 | -- | -- |
| 36.5 | 0.281 | 11.5 | 0.104 | 0.82 | -0.538 | -0.58 | -- | -0.00757 | 13.3 | 15.27 | 24567 | -- | -- |
| 34.3 | 0.273 | 11.4 | 0.745 | 0.766 | -0.812 | -- | 4.84 | 0.00406 | 13.5 | 25.53 | 4160 | -- | -- |
| 36.69 | 0.282 | 11.5 | 0.106 | 0.767 | -0.646 | -- | -- | 0.0344 | 13.3 | 13.34 | 24165 | -- | -- |
| 65.08 | 0.376 | 11.4 | 0.938 | -- | -0.95 | -- | 4.39 | 0.137 | -- | 24.26 | 2518 | -- | -- |
| 42.27 | 0.305 | 11.6 | -0.448 | 0.799 | -- | -0.433 | -- | -0.226 | 13.4 | -- | -- | -- | -- |
| 43.03 | 0.307 | 11.6 | -0.463 | 0.798 | -- | -- | -- | -0.229 | 13.4 | -- | -- | -- | -- |
| 73.16 | 0.4 | 11.6 | -0.58 | -- | 0.602 | -- | -- | -0.307 | -- | 24.26 | 2518 | -- | -- |
| 36.71 | 0.282 | 11.5 | -- | 0.777 | -0.57 | -- | -- | -0.0211 | 13.4 | 11.85 | 24157 | -- | -- |
| 82.26 | 0.424 | 11.6 | -0.494 | -- | -- | -- | -- | -0.246 | -- | -- | -- | -- | -- |
| 48.67 | 0.326 | 11.6 | -- | 0.807 | -- | -- | -- | -0.177 | 13.4 | -- | -- | -- | -- |
| 73.54 | 0.399 | 11.5 | -- | -- | -0.643 | -- | -- | -0.0117 | -- | 9.886 | 24077 | -- | -- |
| 88.7 | 0.44 | 11.6 | -- | -- | -- | -- | -- | -0.191 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.72 | temperature | 15 | 43200 | < th | dose dependent | rect. | 1 | 3 |
| 5 | 30.75 | temperature | 15 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 28 | 30.97 | humidity | 90 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 64 | 31.19 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 71 | 31.22 | temperature | 15 | 43200 | < th | dose dependent | sin | 7 | NA |
| 93 | 31.27 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 2 |
| 96 | 31.28 | humidity | 90 | 43200 | > th | dose dependent | rect. | 13 | 2 |
| 117 | 31.35 | humidity | 90 | 43200 | > th | dose dependent | rect. | 4 | 4 |
| 128 | 31.37 | radiation | 40 | 14400 | < th | dose independent | rect. | 3 | 5 |
| 138 | 31.40 | humidity | 90 | 43200 | > th | dose dependent | rect. | 3 | 14 |
| 149 | 31.43 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 150 | 31.43 | humidity | 90 | 43200 | > th | dose independent | rect. | 2 | 15 |
| 151 | 31.43 | radiation | 40 | 14400 | < th | dose independent | rect. | 17 | 15 |
| 197 | 31.51 | wind | 9 | 43200 | > th | dose independent | rect. | 9 | 6 |
| 206 | 31.52 | humidity | 60 | 43200 | < th | dose dependent | rect. | 19 | 14 |
| 224 | 31.55 | humidity | 60 | 43200 | < th | dose independent | rect. | 19 | 10 |
| 260 | 31.59 | temperature | 15 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 271 | 31.61 | humidity | 60 | 43200 | > th | dose independent | rect. | 19 | 11 |
| 281 | 31.62 | humidity | 90 | 43200 | > th | dose dependent | sin | 2 | NA |
| 290 | 31.63 | temperature | 15 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 291 | 31.63 | temperature | 15 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 305 | 31.64 | humidity | 90 | 43200 | < th | dose independent | rect. | 2 | 16 |
| 307 | 31.64 | radiation | 40 | 4320 | < th | dose independent | rect. | 15 | 17 |
| 318 | 31.65 | temperature | 15 | 43200 | > th | dose independent | rect. | 24 | 6 |
| 319 | 31.65 | temperature | 15 | 43200 | < th | dose independent | rect. | 24 | 6 |
| 332 | 31.66 | humidity | 90 | 43200 | > th | dose independent | sin | 3 | NA |
| 356 | 31.68 | temperature | 15 | 43200 | > th | dose independent | rect. | 24 | 4 |
| 389 | 31.70 | temperature | 15 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 391 | 31.70 | wind | 9 | 43200 | < th | dose independent | rect. | 9 | 6 |
| 396 | 31.70 | temperature | 15 | 43200 | < th | dose dependent | no | NA | NA |
| 464 | 31.77 | wind | 7 | 43200 | > th | dose dependent | rect. | 9 | 6 |
| 502 | 31.81 | radiation | 10 | 270 | < th | dose independent | rect. | 24 | 19 |
| 544 | 31.86 | humidity | 90 | 43200 | < th | dose independent | sin | 3 | NA |
| 545 | 31.86 | temperature | 15 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 607 | 31.91 | humidity | 90 | 43200 | > th | dose independent | rect. | 3 | 8 |
| 622 | 31.92 | temperature | 15 | 43200 | > th | dose independent | sin | 7 | NA |
| 645 | 31.94 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 4 |
| 700 | 31.98 | humidity | 90 | 43200 | > th | dose independent | rect. | 6 | 22 |
| 740 | 32.01 | temperature | 15 | 43200 | < th | dose independent | sin | 7 | NA |
| 783 | 32.04 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 791 | 32.04 | humidity | 90 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 792 | 32.04 | humidity | 60 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 816 | 32.06 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 2 |
| 834 | 32.07 | humidity | 90 | 43200 | > th | dose independent | no | NA | NA |
| 861 | 32.08 | humidity | 60 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 908 | 32.11 | wind | 7 | 43200 | > th | dose dependent | rect. | 5 | 10 |
| 915 | 32.12 | wind | 7 | 43200 | < th | dose independent | rect. | 9 | 3 |
| 924 | 32.12 | humidity | 90 | 43200 | > th | dose independent | rect. | 10 | 23 |
| 925 | 32.12 | humidity | 90 | 43200 | > th | dose independent | rect. | 15 | 23 |
| 928 | 32.12 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 964 | 32.14 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 972 | 32.14 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 2 |
| 975 | 32.15 | humidity | 60 | 43200 | < th | dose independent | rect. | 19 | 3 |
| 992 | 32.16 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 19 | 1 |