Os12g0617800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Sodium/hydrogen exchanger family protein.
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Os12g0617800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Sodium/hydrogen exchanger family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 60.96 | 0.367 | 12.9 | -0.366 | 0.52 | -1.74 | 1.08 | 0.131 | 0.0568 | 7.64 | 15.88 | 424 | -- | -- |
| 60.96 | 0.364 | 12.9 | -0.39 | 0.516 | -1.71 | 1.05 | -- | 0.0515 | 7.62 | 16.2 | 429 | -- | -- |
| 63.76 | 0.372 | 13 | -0.428 | 0.527 | -1.65 | -- | -0.422 | 0.0324 | 7.34 | 16.68 | 438 | -- | -- |
| 63.97 | 0.373 | 12.9 | -0.358 | 0.51 | -1.72 | -- | -- | 0.0533 | 7.34 | 16.44 | 439 | -- | -- |
| 74.49 | 0.402 | 12.9 | -0.301 | -- | -2.02 | -- | -0.118 | 0.111 | -- | 16.99 | 459 | -- | -- |
| 98.81 | 0.466 | 13 | -0.79 | 1.02 | -- | 1.37 | -- | -0.22 | 6.85 | -- | -- | -- | -- |
| 103.53 | 0.476 | 13 | -0.767 | 1.03 | -- | -- | -- | -0.224 | 6.73 | -- | -- | -- | -- |
| 74.34 | 0.402 | 12.9 | -0.254 | -- | -2.09 | -- | -- | 0.128 | -- | 16.97 | 459 | -- | -- |
| 66.98 | 0.381 | 12.9 | -- | 0.468 | -1.91 | -- | -- | 0.111 | 7.42 | 15.92 | 445 | -- | -- |
| 158.43 | 0.588 | 13 | -0.743 | -- | -- | -- | -- | -0.204 | -- | -- | -- | -- | -- |
| 119.03 | 0.51 | 13 | -- | 1.02 | -- | -- | -- | -0.139 | 6.77 | -- | -- | -- | -- |
| 75.88 | 0.406 | 12.9 | -- | -- | -2.21 | -- | -- | 0.166 | -- | 16.6 | 465 | -- | -- |
| 173.01 | 0.614 | 13 | -- | -- | -- | -- | -- | -0.121 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.65 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 1 | 17 |
| 43 | 53.98 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 6 | 18 |
| 71 | 55.65 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 88 | 56.69 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 100 | 57.07 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 11 | 8 |
| 122 | 57.79 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 12 | 18 |
| 153 | 59.10 | temperature | 30.0 | 270 | < th | dose independent | rect. | 6 | 18 |
| 197 | 60.14 | temperature | 20.0 | 270 | > th | dose independent | rect. | 24 | 18 |
| 210 | 60.29 | humidity | 60.0 | 270 | > th | dose independent | rect. | 17 | 8 |
| 213 | 60.37 | temperature | 30.0 | 270 | < th | dose independent | rect. | 17 | 8 |
| 214 | 60.37 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 15 | 10 |
| 269 | 61.43 | radiation | 1.0 | 270 | < th | dose independent | rect. | 15 | 10 |
| 311 | 62.11 | radiation | 1.0 | 270 | < th | dose independent | rect. | 8 | 17 |
| 322 | 62.31 | temperature | 30.0 | 270 | < th | dose independent | rect. | 17 | 20 |
| 366 | 62.82 | temperature | 15.0 | 270 | > th | dose dependent | sin | 22 | NA |
| 401 | 63.22 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 6 | 19 |
| 458 | 63.78 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 462 | 63.82 | temperature | 30.0 | 270 | < th | dose dependent | sin | 21 | NA |
| 502 | 64.11 | radiation | 1.0 | 270 | < th | dose independent | sin | 17 | NA |
| 506 | 64.14 | wind | 9.0 | 270 | < th | dose independent | rect. | 1 | 16 |
| 509 | 64.15 | temperature | 25.0 | 270 | > th | dose independent | rect. | 11 | 7 |
| 518 | 64.22 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 23 | 8 |
| 528 | 64.32 | temperature | 15.0 | 270 | > th | dose dependent | no | NA | NA |
| 554 | 64.50 | temperature | 10.0 | 270 | > th | dose independent | rect. | 17 | 8 |
| 559 | 64.50 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 1 | 16 |
| 565 | 64.53 | wind | 9.0 | 270 | < th | dose independent | rect. | 17 | 8 |
| 569 | 64.55 | temperature | 20.0 | 270 | > th | dose independent | rect. | 24 | 7 |
| 585 | 64.64 | radiation | 1.0 | 270 | > th | dose independent | sin | 17 | NA |
| 587 | 64.65 | temperature | 15.0 | 720 | > th | dose dependent | sin | 5 | NA |
| 591 | 64.67 | radiation | 1.0 | 270 | < th | dose dependent | sin | 18 | NA |
| 678 | 65.10 | wind | 1.0 | 270 | > th | dose independent | rect. | 17 | 8 |
| 687 | 65.17 | radiation | 1.0 | 270 | > th | dose independent | rect. | 12 | 7 |
| 701 | 65.18 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 23 | 8 |
| 717 | 65.25 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 16 |
| 720 | 65.25 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 16 |
| 723 | 65.26 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 17 | 22 |
| 810 | 65.62 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 11 | 8 |
| 816 | 65.65 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 17 | 8 |
| 858 | 65.82 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 8 |
| 859 | 65.82 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 8 |
| 860 | 65.83 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 8 |
| 861 | 65.83 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 5 | 8 |
| 862 | 65.83 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 5 | 8 |
| 863 | 65.83 | temperature | 10.0 | 270 | > th | dose independent | rect. | 13 | 16 |
| 866 | 65.84 | wind | 9.0 | 270 | < th | dose independent | rect. | 13 | 16 |
| 906 | 65.95 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 17 | 8 |
| 908 | 65.95 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 17 | 8 |
| 924 | 66.03 | humidity | 90.0 | 270 | < th | dose independent | rect. | 12 | 6 |
| 949 | 66.11 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 23 | 20 |
| 967 | 66.16 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 17 | 20 |
| 975 | 66.20 | humidity | 50.0 | 270 | > th | dose independent | rect. | 6 | 18 |
| 993 | 66.24 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 8 |