BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0617800 Os12g0617800|AK068845
         (791 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0617800  Sodium/hydrogen exchanger family protein           1222   0.0  
Os04g0682800  Sodium/hydrogen exchanger family protein            206   4e-53

>Os12g0617800 Sodium/hydrogen exchanger family protein
          Length = 791

 Score = 1222 bits (3161), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 636/775 (82%), Positives = 636/775 (82%)

Query: 17  VVVGSSRSAPVSVSVCVRRWCGGASSSALLRVGMIXXXXXXXXXXXXXXXXXXXXXXXXX 76
           VVVGSSRSAPVSVSVCVRRWCGGASSSALLRVGMI                         
Sbjct: 17  VVVGSSRSAPVSVSVCVRRWCGGASSSALLRVGMIGGASASSAEGRGRRRWWRRGRRALR 76

Query: 77  XXXXXXMDIASAVEVINDLGFDXXXXXXXXXXXXPAFRVVKASPILGFFCAGVVLNQFGL 136
                 MDIASAVEVINDLGFD            PAFRVVKASPILGFFCAGVVLNQFGL
Sbjct: 77  VRAAAGMDIASAVEVINDLGFDTLTFLGVTVLVVPAFRVVKASPILGFFCAGVVLNQFGL 136

Query: 137 IRNLTDVKLLSEWGILFLLFEMGLELSLSRLKALARYAFGMGLPQVLLSTLAFTAFELPP 196
           IRNLTDVKLLSEWGILFLLFEMGLELSLSRLKALARYAFGMGLPQVLLSTLAFTAFELPP
Sbjct: 137 IRNLTDVKLLSEWGILFLLFEMGLELSLSRLKALARYAFGMGLPQVLLSTLAFTAFELPP 196

Query: 197 NGAIGTKILQFLFDSRPDLVNIRSVDEAIVIGXXXXXXXXXXXXXXXXEKGELPTRFGSA 256
           NGAIGTKILQFLFDSRPDLVNIRSVDEAIVIG                EKGELPTRFGSA
Sbjct: 197 NGAIGTKILQFLFDSRPDLVNIRSVDEAIVIGAALSLSSSAFVLQLLAEKGELPTRFGSA 256

Query: 257 TLGILLLQDIAXXXXXXXXXXXESQNVVEQSVWPMXXXXXXXXXXXXXXXXXXXXXXIRR 316
           TLGILLLQDIA           ESQNVVEQSVWPM                      IRR
Sbjct: 257 TLGILLLQDIAVVPLLVILPVLESQNVVEQSVWPMLLAESLKALGGLGLLSLGGKYLIRR 316

Query: 317 IFEFVAESRSSEAFVALCLLTVSGTSLLTQWLGFSDTLGAFLAGAILAETNFRTQIEADI 376
           IFEFVAESRSSEAFVALCLLTVSGTSLLTQWLGFSDTLGAFLAGAILAETNFRTQIEADI
Sbjct: 317 IFEFVAESRSSEAFVALCLLTVSGTSLLTQWLGFSDTLGAFLAGAILAETNFRTQIEADI 376

Query: 377 RPXXXXXXXXXXXXXXXSIDMELLIREWPNVLSXXXXXXXXXXXXXXXXXPRVGLTLQES 436
           RP               SIDMELLIREWPNVLS                 PRVGLTLQES
Sbjct: 377 RPFRGLLLGLFFVTTGTSIDMELLIREWPNVLSLLGGLIAIKTLIITAIGPRVGLTLQES 436

Query: 437 VRIGLLLSQGGEFGFVVFSLANRLGVLPLELNKLLIIVVVLSMALTPLLNEIGRRAAGII 496
           VRIGLLLSQGGEFGFVVFSLANRLGVLPLELNKLLIIVVVLSMALTPLLNEIGRRAAGII
Sbjct: 437 VRIGLLLSQGGEFGFVVFSLANRLGVLPLELNKLLIIVVVLSMALTPLLNEIGRRAAGII 496

Query: 497 DEKSETKEKPAEMVNYDATEPIVILGFGEMGKVLAKFLSAPLSFGLDKDAEGWPYVAFDL 556
           DEKSETKEKPAEMVNYDATEPIVILGFGEMGKVLAKFLSAPLSFGLDKDAEGWPYVAFDL
Sbjct: 497 DEKSETKEKPAEMVNYDATEPIVILGFGEMGKVLAKFLSAPLSFGLDKDAEGWPYVAFDL 556

Query: 557 NPAVVKSARKSGFPVLYGDGSRPLVLQSAGVSSPKAVMVMYTGKEKTIEAVNRLRQAFPG 616
           NPAVVKSARKSGFPVLYGDGSRPLVLQSAGVSSPKAVMVMYTGKEKTIEAVNRLRQAFPG
Sbjct: 557 NPAVVKSARKSGFPVLYGDGSRPLVLQSAGVSSPKAVMVMYTGKEKTIEAVNRLRQAFPG 616

Query: 617 VPMYARAQDMSHLLDLKKAGATEVVLENAETSLQLGSMLLRGLGVMSDDVSFFSKLVRDS 676
           VPMYARAQDMSHLLDLKKAGATEVVLENAETSLQLGSMLLRGLGVMSDDVSFFSKLVRDS
Sbjct: 617 VPMYARAQDMSHLLDLKKAGATEVVLENAETSLQLGSMLLRGLGVMSDDVSFFSKLVRDS 676

Query: 677 MELQAQEALNNIENREIDIMKPLEIRISDLVERNGNGSRMIAQEDSLRLSSRPNIPLIEA 736
           MELQAQEALNNIENREIDIMKPLEIRISDLVERNGNGSRMIAQEDSLRLSSRPNIPLIEA
Sbjct: 677 MELQAQEALNNIENREIDIMKPLEIRISDLVERNGNGSRMIAQEDSLRLSSRPNIPLIEA 736

Query: 737 TLEDRIPETTGENDQTGYDFNNIDSEDGVKYCLLXXXXXXXXXXXXXXXMIDQSV 791
           TLEDRIPETTGENDQTGYDFNNIDSEDGVKYCLL               MIDQSV
Sbjct: 737 TLEDRIPETTGENDQTGYDFNNIDSEDGVKYCLLEASDDESEASNSSKEMIDQSV 791



>Os04g0682800 Sodium/hydrogen exchanger family protein
          Length = 1154

 Score =  206 bits (525), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 182/546 (33%), Positives = 257/546 (47%), Gaps = 39/546 (7%)

Query: 111  PAF-RVVKASPILGFFCAGVVLNQFGL--IRNLTDVKLLSEWGILFLLFEMGLELSLSRL 167
            P F ++   SP+LG+  AGV++  +GL  IR++   K ++E+G++FLLF +GLELS+ RL
Sbjct: 565  PLFQKIPGGSPVLGYLAAGVLIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERL 624

Query: 168  KALARYAFGMGLPQVLLSTLAFTAFELPPNGAIGTKILQFLFDSRPDLVNIRSVDEAIVI 227
             ++ +Y FG+G  QVL +T            A+G    +F     P          AIVI
Sbjct: 625  SSMKKYVFGLGSAQVLATT-----------AAVGMIAHRFAVLPGP---------AAIVI 664

Query: 228  GXXXXXXXXXXXXXXXXEKGELPTRFGSATLGILLLQDIAXXXXXXXXXXXESQN----V 283
            G                E+GE  +R G AT  +LL QD+A              +    V
Sbjct: 665  GSGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGV 724

Query: 284  VEQSVWPMXXXXXXXXXXXXXXXXXXXXXXIRRIFEFVAESRSSEAFVALCLLTVSGTSL 343
              Q++                         +R I++ +AE+R++E F A  LL + GTSL
Sbjct: 725  GFQAIAEAMGMAAVKAIAAITAIIAGGRLLLRPIYKQIAENRNAEIFSANTLLVIFGTSL 784

Query: 344  LTQWLGFSDTLGAFLAGAILAETNFRTQIEADIRPXXXXXXXXXXXXXXXSIDMELLIRE 403
            LT   G S  LGAFLAG +LAET F  Q+E+DI P               SID +LL+  
Sbjct: 785  LTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSN 844

Query: 404  WPNVLSXXXXXXXXXXXXXXXXXPRV-GLTLQESVRIGLLLSQGGEFGFVVFSLANRLGV 462
            +P  +S                  RV G++   +VR+GLLL+ GGEF FV F  A   G+
Sbjct: 845  FP-AISVILGLLIIGKTMLVTFIGRVFGISTIAAVRVGLLLAPGGEFAFVAFGEAVNQGL 903

Query: 463  LPLELNKLLIIVVVLSMALTPLLNEIGRRAAGIIDEKSETKEKPAEMVNYDATEPIVILG 522
            L  +L+ LL +VV +SMALTP L   G+  A   ++       P E    D  + I+ILG
Sbjct: 904  LSPQLSSLLFLVVGISMALTPWLAAGGQFLASKFEQHDVRSLLPVESETDDLQDHIIILG 963

Query: 523  FGEMGKVLAKFLSAPLSFGLDKDAEGWPYVAFDLNPAVVKSARKSGFPVLYGDGSRPLVL 582
            FG +G+++A+ LS  L           P+VA D+    V   R    PV +GD     VL
Sbjct: 964  FGRVGQIIAQLLSERL----------IPFVALDVRSDRVAVGRALDLPVYFGDAGSREVL 1013

Query: 583  QSAGVSSPKAVMVMYTGKEKTIEAVNRLRQAFPGVPMYARAQDMSHLLDLKKAGATEVVL 642
               G     A  +          AV  L + FP V  + RA D+ H ++L+KAGAT VV 
Sbjct: 1014 HKVGAERACAAAITLDTPGANYRAVWALSKYFPNVKTFVRAHDVDHGVNLEKAGATAVVP 1073

Query: 643  ENAETS 648
            E  E S
Sbjct: 1074 ETLEPS 1079



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.138    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,592,683
Number of extensions: 642698
Number of successful extensions: 1398
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1393
Number of HSP's successfully gapped: 3
Length of query: 791
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 682
Effective length of database: 11,344,475
Effective search space: 7736931950
Effective search space used: 7736931950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 160 (66.2 bits)