Os03g0127900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Sodium/hydrogen exchanger family protein.
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Os03g0127900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Sodium/hydrogen exchanger family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 64.29 | 0.377 | 9.13 | 0.042 | 3.13 | 0.384 | 0.393 | 1.11 | -0.0561 | 8.97 | 29.98 | 1167 | -- | -- |
| 64.34 | 0.374 | 9.15 | -0.148 | 3.13 | 0.503 | 0.397 | -- | -0.0566 | 8.97 | 30.1 | 1171 | -- | -- |
| 64.8 | 0.375 | 9.13 | 0.0601 | 3.12 | 0.375 | -- | 1.13 | -0.0568 | 8.97 | 30.2 | 1172 | -- | -- |
| 64.85 | 0.375 | 9.15 | -0.128 | 3.13 | 0.501 | -- | -- | -0.0582 | 8.97 | 30.12 | 1182 | -- | -- |
| 604.31 | 1.14 | 9.28 | -0.244 | -- | 0.835 | -- | -1.16 | -0.0901 | -- | 30.44 | 5850 | -- | -- |
| 76.46 | 0.41 | 9.17 | -0.00869 | 3.09 | -- | 0.312 | -- | -0.152 | 8.88 | -- | -- | -- | -- |
| 76.79 | 0.41 | 9.17 | 0.00184 | 3.09 | -- | -- | -- | -0.152 | 8.88 | -- | -- | -- | -- |
| 581.9 | 1.12 | 9.25 | -0.153 | -- | 0.778 | -- | -- | -0.158 | -- | 34 | 7239 | -- | -- |
| 65.25 | 0.376 | 9.15 | -- | 3.12 | 0.485 | -- | -- | -0.0464 | 8.97 | 30.2 | 1172 | -- | -- |
| 621.68 | 1.17 | 9.26 | 0.00206 | -- | -- | -- | -- | -0.13 | -- | -- | -- | -- | -- |
| 76.79 | 0.41 | 9.17 | -- | 3.09 | -- | -- | -- | -0.152 | 8.88 | -- | -- | -- | -- |
| 582.64 | 1.12 | 9.26 | -- | -- | 0.739 | -- | -- | -0.193 | -- | 34 | 7239 | -- | -- |
| 621.68 | 1.16 | 9.26 | -- | -- | -- | -- | -- | -0.13 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 62.36 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 19 |
| 4 | 63.28 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 15 |
| 6 | 63.29 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 12 |
| 12 | 63.53 | radiation | 1 | 30 | > th | dose independent | rect. | 12 | 19 |
| 29 | 64.23 | temperature | 30 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 30 | 64.25 | temperature | 30 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 31 | 64.25 | temperature | 30 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 69 | 64.48 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 5 |
| 80 | 64.49 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 3 |
| 106 | 64.59 | temperature | 30 | 10 | < th | dose independent | rect. | 7 | 21 |
| 110 | 64.60 | radiation | 1 | 30 | > th | dose dependent | rect. | 12 | 19 |
| 132 | 64.63 | radiation | 40 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 159 | 64.67 | temperature | 30 | 14400 | > th | dose dependent | sin | 13 | NA |
| 161 | 64.67 | temperature | 10 | 10 | > th | dose dependent | rect. | 12 | 19 |
| 179 | 64.71 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 4 |
| 206 | 64.75 | temperature | 30 | 14400 | > th | dose independent | sin | 13 | NA |
| 236 | 64.79 | temperature | 30 | 14400 | < th | dose independent | sin | 13 | NA |
| 249 | 64.88 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 252 | 64.90 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 21 |
| 267 | 64.91 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 18 |
| 273 | 64.92 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 11 |
| 278 | 64.94 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 12 |
| 286 | 64.98 | temperature | 30 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 288 | 64.99 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 291 | 64.99 | temperature | 30 | 1440 | > th | dose dependent | rect. | 17 | 21 |
| 317 | 65.02 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 21 |
| 318 | 65.02 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 319 | 65.02 | temperature | 30 | 1440 | > th | dose dependent | rect. | 10 | 6 |
| 343 | 65.04 | temperature | 30 | 1440 | > th | dose dependent | sin | 2 | NA |
| 363 | 65.05 | temperature | 30 | 1440 | > th | dose independent | rect. | 18 | 18 |
| 378 | 65.07 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 389 | 65.08 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 395 | 65.08 | temperature | 30 | 1440 | > th | dose dependent | rect. | 10 | 9 |
| 631 | 65.14 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 10 |
| 707 | 65.21 | temperature | 30 | 1440 | < th | dose independent | sin | 10 | NA |
| 961 | 65.33 | temperature | 30 | 1440 | > th | dose independent | sin | 10 | NA |