BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0548000 Os06g0548000|AK101008
(463 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0548000 Aspartate aminotransferase (EC 2.6.1.1) 872 0.0
Os02g0236000 Similar to Aspartate aminotransferase (EC 2.6.... 797 0.0
AK107623 460 e-129
AK109721 439 e-123
Os01g0760600 Aspartate aminotransferase, cytoplasmic (EC 2.... 418 e-117
Os02g0797500 Similar to Plastidic aspartate aminotransferase 396 e-110
D10968 109 4e-24
>Os06g0548000 Aspartate aminotransferase (EC 2.6.1.1)
Length = 463
Score = 872 bits (2254), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/463 (91%), Positives = 422/463 (91%)
Query: 1 MHTRSRRLGFXXXXXXXXXXXXXXXXXXXDXXXXXXXXXXXXXXXXXXXXXXLMGAVAAR 60
MHTRSRRLGF D LMGAVAAR
Sbjct: 1 MHTRSRRLGFPPLNPSHLLLTPHLPPLSSDRARMAMSRAAAAAAGTPVARRRLMGAVAAR 60
Query: 61 SMASWFGHVEPAAKDPILGVTEAFLADPSPDKVNVGVGAYRDDSGKPVVLECVREAERRI 120
SMASWFGHVEPAAKDPILGVTEAFLADPSPDKVNVGVGAYRDDSGKPVVLECVREAERRI
Sbjct: 61 SMASWFGHVEPAAKDPILGVTEAFLADPSPDKVNVGVGAYRDDSGKPVVLECVREAERRI 120
Query: 121 AGSMNMEYLPMGGSIKMIEESLKLAYGENCEFIKDKRIAAVQALSGTGACRLFADFQKRF 180
AGSMNMEYLPMGGSIKMIEESLKLAYGENCEFIKDKRIAAVQALSGTGACRLFADFQKRF
Sbjct: 121 AGSMNMEYLPMGGSIKMIEESLKLAYGENCEFIKDKRIAAVQALSGTGACRLFADFQKRF 180
Query: 181 LPDSQIYIPTPTWANHHNIWRDAQVPQKTFTYYHPESRGLDFAGLMDDIKNAPDGSFFLL 240
LPDSQIYIPTPTWANHHNIWRDAQVPQKTFTYYHPESRGLDFAGLMDDIKNAPDGSFFLL
Sbjct: 181 LPDSQIYIPTPTWANHHNIWRDAQVPQKTFTYYHPESRGLDFAGLMDDIKNAPDGSFFLL 240
Query: 241 HACAHNPTGVDPSEEQWREISHQFKVKKHFPFFDMAYQGFASGDPERDAKAIRIFLEDGH 300
HACAHNPTGVDPSEEQWREISHQFKVKKHFPFFDMAYQGFASGDPERDAKAIRIFLEDGH
Sbjct: 241 HACAHNPTGVDPSEEQWREISHQFKVKKHFPFFDMAYQGFASGDPERDAKAIRIFLEDGH 300
Query: 301 QIGCAQSYAKNMGLYGQRAGCLSILCDDEMQAVAVKSQLQQIARPLYSNPPVHGALIVST 360
QIGCAQSYAKNMGLYGQRAGCLSILCDDEMQAVAVKSQLQQIARPLYSNPPVHGALIVST
Sbjct: 301 QIGCAQSYAKNMGLYGQRAGCLSILCDDEMQAVAVKSQLQQIARPLYSNPPVHGALIVST 360
Query: 361 ILGDPELKSLWLKEVKGMADRIIGMRTALKENLEKLGSPMSWEHITNQIGMFCYSGMTPE 420
ILGDPELKSLWLKEVKGMADRIIGMRTALKENLEKLGSPMSWEHITNQIGMFCYSGMTPE
Sbjct: 361 ILGDPELKSLWLKEVKGMADRIIGMRTALKENLEKLGSPMSWEHITNQIGMFCYSGMTPE 420
Query: 421 QVDRLTKEFHIYMTRNGRISMAGVTTGNVAYLANAIHEVTKTK 463
QVDRLTKEFHIYMTRNGRISMAGVTTGNVAYLANAIHEVTKTK
Sbjct: 421 QVDRLTKEFHIYMTRNGRISMAGVTTGNVAYLANAIHEVTKTK 463
>Os02g0236000 Similar to Aspartate aminotransferase (EC 2.6.1.1) (Fragment)
Length = 432
Score = 797 bits (2058), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/400 (92%), Positives = 392/400 (98%)
Query: 64 SWFGHVEPAAKDPILGVTEAFLADPSPDKVNVGVGAYRDDSGKPVVLECVREAERRIAGS 123
S FGHVEPA+KDPILGVTEAFLADPSPDKVNVGVGAYRDD+GKPVVLECVREAERRIAG+
Sbjct: 33 SLFGHVEPASKDPILGVTEAFLADPSPDKVNVGVGAYRDDNGKPVVLECVREAERRIAGN 92
Query: 124 MNMEYLPMGGSIKMIEESLKLAYGENCEFIKDKRIAAVQALSGTGACRLFADFQKRFLPD 183
+NMEYLPMGGSIKMIEESLKLAYGE+ +FIKDKRIAAVQALSGTGACRLFADFQ+RFLP+
Sbjct: 93 LNMEYLPMGGSIKMIEESLKLAYGEDSDFIKDKRIAAVQALSGTGACRLFADFQRRFLPN 152
Query: 184 SQIYIPTPTWANHHNIWRDAQVPQKTFTYYHPESRGLDFAGLMDDIKNAPDGSFFLLHAC 243
SQIYIPTPTW+NHHNIWRDAQVPQ+TFTYYHPESRGLDFAGLMDDIKNAP+GSFFLLHAC
Sbjct: 153 SQIYIPTPTWSNHHNIWRDAQVPQRTFTYYHPESRGLDFAGLMDDIKNAPNGSFFLLHAC 212
Query: 244 AHNPTGVDPSEEQWREISHQFKVKKHFPFFDMAYQGFASGDPERDAKAIRIFLEDGHQIG 303
AHNPTGVDP+EEQWREIS+QFK+K HFPFFDMAYQGFASGDPERDAKAIRIFLEDGHQIG
Sbjct: 213 AHNPTGVDPTEEQWREISYQFKIKNHFPFFDMAYQGFASGDPERDAKAIRIFLEDGHQIG 272
Query: 304 CAQSYAKNMGLYGQRAGCLSILCDDEMQAVAVKSQLQQIARPLYSNPPVHGALIVSTILG 363
CAQSYAKNMGLYGQRAGCLSILC+DEMQAV+VKSQLQQIARP+YSNPPVHGAL+VS IL
Sbjct: 273 CAQSYAKNMGLYGQRAGCLSILCEDEMQAVSVKSQLQQIARPMYSNPPVHGALVVSIILN 332
Query: 364 DPELKSLWLKEVKGMADRIIGMRTALKENLEKLGSPMSWEHITNQIGMFCYSGMTPEQVD 423
DPELKSLWLKEVKGMADRIIGMR AL+ENLE LGSP+SW+HITNQIGMFCYSGMTPEQVD
Sbjct: 333 DPELKSLWLKEVKGMADRIIGMRKALRENLEGLGSPLSWDHITNQIGMFCYSGMTPEQVD 392
Query: 424 RLTKEFHIYMTRNGRISMAGVTTGNVAYLANAIHEVTKTK 463
RLT E+HIYMTRNGRISMAGVTTGNVAYLANAIHEVTKTK
Sbjct: 393 RLTNEYHIYMTRNGRISMAGVTTGNVAYLANAIHEVTKTK 432
>AK107623
Length = 432
Score = 460 bits (1183), Expect = e-129, Method: Compositional matrix adjust.
Identities = 222/406 (54%), Positives = 291/406 (71%), Gaps = 3/406 (0%)
Query: 58 AARSMASWFGHVEPAAKDPILGVTEAFLADPSPDKVNVGVGAYRDDSGKPVVLECVREAE 117
A R S + HV+ D ILGVTEAF D P K+N+GVGAYRD++GKP VL VR+AE
Sbjct: 26 AVRQYKSTWAHVKAGPPDAILGVTEAFKRDQDPRKINLGVGAYRDENGKPYVLPSVRQAE 85
Query: 118 RRIAGSM-NMEYLPMGGSIKMIEESLKLAYGENCEFIKDKRIAAVQALSGTGACRLFADF 176
+ S + EYLP+ G + + LAYG++ +K+ RIA Q++SGTGA R+ F
Sbjct: 86 ELVITSKGDKEYLPITGLADFTKNAAILAYGKDSAPVKENRIAITQSISGTGALRIGGAF 145
Query: 177 QKRFLPDSQ-IYIPTPTWANHHNIWRDAQVPQKTFTYYHPESRGLDFAGLMDDIKNAPDG 235
+R P+++ IY+PTP+W NH I+RD+ + K + YY ++ GLDF G++DDIK AP G
Sbjct: 146 LQRHYPEAKSIYLPTPSWGNHTPIFRDSGLEVKQYRYYDKKTVGLDFKGMIDDIKAAPAG 205
Query: 236 SFFLLHACAHNPTGVDPSEEQWREISHQFKVKKHFPFFDMAYQGFASGDPERDAKAIRIF 295
S LLHACAHNPTGVDP+ EQW+EIS+ K K HFPFFDMAYQGFASGD ++DA A+R F
Sbjct: 206 SIVLLHACAHNPTGVDPTVEQWKEISNVVKEKGHFPFFDMAYQGFASGDTDKDAFAVRHF 265
Query: 296 LEDGHQIGCAQSYAKNMGLYGQRAGCLSILCDDEMQAVAVKSQLQQIARPLYSNPPVHGA 355
+ +GHQI +QS+AKNMGLYG+R G S++C D + V SQ++ I RPLYSNPP+HGA
Sbjct: 266 VSEGHQIALSQSFAKNMGLYGERVGAFSVVCADPDERARVDSQIKIIVRPLYSNPPMHGA 325
Query: 356 LIVSTILGDPELKSLWLKEVKGMADRIIGMRTALKENL-EKLGSPMSWEHITNQIGMFCY 414
I +TIL D +L WL EVKGMADRI GMR+ LK L E L S ++W+HITNQIGMF +
Sbjct: 326 KIAATILADQQLYQQWLGEVKGMADRINGMRSTLKNLLVEDLNSKLNWDHITNQIGMFAF 385
Query: 415 SGMTPEQVDRLTKEFHIYMTRNGRISMAGVTTGNVAYLANAIHEVT 460
G++PEQV +L E H+Y+T +GRIS+AG+T NV +LA ++H+VT
Sbjct: 386 LGISPEQVAKLVNEHHVYLTGDGRISVAGITNHNVKHLAESLHKVT 431
>AK109721
Length = 419
Score = 439 bits (1129), Expect = e-123, Method: Compositional matrix adjust.
Identities = 206/408 (50%), Positives = 295/408 (72%), Gaps = 3/408 (0%)
Query: 56 AVAARSMASWFGHVEPAAKDPILGVTEAFLADPSPDKVNVGVGAYRDDSGKPVVLECVRE 115
A+ A+S W+ +V+ A DPILGVT+AF D +P+K+N+GVGAYRDD+GKP VLECV++
Sbjct: 13 AMNAKS-THWWTNVKMAPPDPILGVTDAFKRDKNPNKINLGVGAYRDDNGKPYVLECVKK 71
Query: 116 AERRIA-GSMNMEYLPMGGSIKMIEESLKLAYGENCEFIKDKRIAAVQALSGTGACRLFA 174
AE+++A +++ EY + G E +++L G++ IK+K Q +SGTG R+
Sbjct: 72 AEKQLAEQNLDKEYTQITGVSDFCEAAVRLLLGDDSPAIKNKLYGVAQTISGTGGLRVGF 131
Query: 175 DFQKRFLPDSQ-IYIPTPTWANHHNIWRDAQVPQKTFTYYHPESRGLDFAGLMDDIKNAP 233
+F +++ P ++ +++PTPTW NH I D+ K + YY P +RG DF G ++D+ P
Sbjct: 132 EFLRKYSPYAKTVWMPTPTWGNHGPIANDSTFEVKYYRYYKPSNRGFDFEGCLEDLNKIP 191
Query: 234 DGSFFLLHACAHNPTGVDPSEEQWREISHQFKVKKHFPFFDMAYQGFASGDPERDAKAIR 293
+ + LL +CAHNPTGVDP++EQW+EISH K ++ FPF D AYQGFASGD +RDA A R
Sbjct: 192 EKNVILLQSCAHNPTGVDPTQEQWKEISHVIKKRQLFPFLDTAYQGFASGDIDRDAFAPR 251
Query: 294 IFLEDGHQIGCAQSYAKNMGLYGQRAGCLSILCDDEMQAVAVKSQLQQIARPLYSNPPVH 353
+F DGH+ AQS++KNMGLYG+R G +S + +D+ + SQL+ R LYSNPP H
Sbjct: 252 LFARDGHEFIVAQSFSKNMGLYGERVGTVSFVVNDKQDLERILSQLRVTIRRLYSNPPRH 311
Query: 354 GALIVSTILGDPELKSLWLKEVKGMADRIIGMRTALKENLEKLGSPMSWEHITNQIGMFC 413
GA + + +L P+L++LWLKEVK MADRII MR+ L +NL+K GS +W+HIT+QIGMFC
Sbjct: 312 GAQVAARVLTQPDLRALWLKEVKLMADRIITMRSTLVDNLKKEGSKHNWQHITDQIGMFC 371
Query: 414 YSGMTPEQVDRLTKEFHIYMTRNGRISMAGVTTGNVAYLANAIHEVTK 461
++G+ +QV+RL K+F +Y+T++GRIS+AGV++ N AYLA+AIHEVTK
Sbjct: 372 FTGLQEKQVERLIKDFSVYLTKDGRISIAGVSSKNNAYLAHAIHEVTK 419
>Os01g0760600 Aspartate aminotransferase, cytoplasmic (EC 2.6.1.1) (Transaminase
A)
Length = 460
Score = 418 bits (1074), Expect = e-117, Method: Compositional matrix adjust.
Identities = 204/404 (50%), Positives = 276/404 (68%), Gaps = 3/404 (0%)
Query: 63 ASWFGHVEPAAKDPILGVTEAFLADPSPDKVNVGVGAYRDDSGKPVVLECVREAERRIAG 122
+S F + A +DPILGVT A+ DPSP KVN+GVGAYR + GKP+VL VR AE+ +
Sbjct: 57 SSVFAGLAQAPEDPILGVTVAYNKDPSPVKVNLGVGAYRTEEGKPLVLNVVRRAEQMLIN 116
Query: 123 --SMNMEYLPMGGSIKMIEESLKLAYGENCEFIKDKRIAAVQALSGTGACRLFADFQKRF 180
S EYLP+ G + S KL +G + I++ R+A VQ LSGTG+ R+ +F R
Sbjct: 117 NPSRVKEYLPITGLADFNKLSAKLIFGADSPAIQENRVATVQCLSGTGSLRVGGEFLARH 176
Query: 181 LPDSQIYIPTPTWANHHNIWRDAQVPQKTFTYYHPESRGLDFAGLMDDIKNAPDGSFFLL 240
+ IYIP PTW NH ++ A + +++ YY P +RGLDF GL++D+ +AP G+ LL
Sbjct: 177 YHERTIYIPQPTWGNHPKVFTLAGLTVRSYRYYDPATRGLDFQGLLEDLGSAPSGAIVLL 236
Query: 241 HACAHNPTGVDPSEEQWREISHQFKVKKHFPFFDMAYQGFASGDPERDAKAIRIFLEDGH 300
HACAHNPTGVDP+ +QW +I + K PFFD AYQGFASG ++DA+++R+F+ DG
Sbjct: 237 HACAHNPTGVDPTLDQWEQIRQLMRSKALLPFFDSAYQGFASGSLDQDAQSVRMFVADGG 296
Query: 301 QIGCAQSYAKNMGLYGQRAGCLSILCDDEMQAVAVKSQLQQIARPLYSNPPVHGALIVST 360
++ AQSYAKNMGLYG+R G LSI+C AV V+SQL+ + RP+YSNPP+HGA IV+T
Sbjct: 297 ELLMAQSYAKNMGLYGERVGALSIVCGSADVAVRVESQLKLVIRPMYSNPPIHGASIVAT 356
Query: 361 ILGDPELKSLWLKEVKGMADRIIGMRTALKENLEKLGSPMSWEHITNQIGMFCYSGMTPE 420
IL D + + W E+KGMADRII MR L + L+ +P W HI QIGMF ++G+ +
Sbjct: 357 ILKDSAMFNEWTVELKGMADRIISMRQQLFDALKTRETPGDWSHIIKQIGMFTFTGLNSD 416
Query: 421 QVDRLTKEFHIYMTRNGRISMAGVTTGNVAYLANAIH-EVTKTK 463
QV + +E+HIYMT +GRISMAG++ + +LA+AIH VTK K
Sbjct: 417 QVAFMRQEYHIYMTSDGRISMAGLSGRTIPHLADAIHAAVTKLK 460
>Os02g0797500 Similar to Plastidic aspartate aminotransferase
Length = 458
Score = 396 bits (1017), Expect = e-110, Method: Compositional matrix adjust.
Identities = 189/395 (47%), Positives = 271/395 (68%), Gaps = 2/395 (0%)
Query: 64 SWFGHVEPAAKDPILGVTEAFLADPSPDKVNVGVGAYRDDSGKPVVLECVREAER-RIAG 122
S F V A DPILGV+EAF AD + K+N+GVGAYR + +P VL V++AE +
Sbjct: 56 SRFEGVPMAPPDPILGVSEAFKADQNDLKLNLGVGAYRTEELQPYVLNVVKKAETLMLEK 115
Query: 123 SMNMEYLPMGGSIKMIEESLKLAYGENCEFIKDKRIAAVQALSGTGACRLFADFQKRFLP 182
N EYLP+ G + + +L +G + +K R+A +Q+LSGTG+ RL A F +R+ P
Sbjct: 116 GENKEYLPIEGLAAFNKATAELLFGADNPVLKQGRVATLQSLSGTGSLRLAAAFIQRYFP 175
Query: 183 DSQIYIPTPTWANHHNIWRDAQVPQKTFTYYHPESRGLDFAGLMDDIKNAPDGSFFLLHA 242
++++ I +PTW NH NI+ DA+VP + YY P++ GLDF G++ DI+ APDGSF LLH
Sbjct: 176 EAKVLISSPTWGNHKNIFNDAKVPWSEYRYYDPKTVGLDFEGMIADIQAAPDGSFVLLHG 235
Query: 243 CAHNPTGVDPSEEQWREISHQFKVKKHFPFFDMAYQGFASGDPERDAKAIRIFLEDGHQI 302
CAHNPTG+DP+ EQW +I+ + KKH PFFD+AYQGFASG + DA ++R+F++ G ++
Sbjct: 236 CAHNPTGIDPTPEQWEKIADVIQEKKHMPFFDVAYQGFASGSLDEDASSVRLFVQRGLEV 295
Query: 303 GCAQSYAKNMGLYGQRAGCLSILCDDEMQAVAVKSQLQQIARPLYSNPPVHGALIVSTIL 362
AQSY+KN+GLY +R G ++++C A VKSQL+++ARP+YSNPP+HGA IV+ ++
Sbjct: 296 FVAQSYSKNLGLYAERIGAINVVCSTPEVANRVKSQLKRLARPMYSNPPIHGARIVANVV 355
Query: 363 GDPELKSLWLKEVKGMADRIIGMRTALKENLE-KLGSPMSWEHITNQIGMFCYSGMTPEQ 421
GDP + W +E++ MA RI +R L ++L K S W I QIGMF Y+G+ Q
Sbjct: 356 GDPTMFGEWKQEMEEMAGRIKNVRQKLYDSLSAKDDSGKDWSFILRQIGMFSYTGLNKTQ 415
Query: 422 VDRLTKEFHIYMTRNGRISMAGVTTGNVAYLANAI 456
D +T ++HIYMT++GRIS+AG++ YLA+AI
Sbjct: 416 SDNMTDKWHIYMTKDGRISLAGLSLAKCEYLADAI 450
>D10968
Length = 102
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 53/89 (59%), Positives = 66/89 (74%)
Query: 306 QSYAKNMGLYGQRAGCLSILCDDEMQAVAVKSQLQQIARPLYSNPPVHGALIVSTILGDP 365
QSYAKNMGLYG+R G LSI+C AV V+SQL+ + RP+YSNPP+HGA IV+TIL D
Sbjct: 1 QSYAKNMGLYGERVGALSIVCGSADVAVRVESQLKLVIRPMYSNPPIHGASIVATILKDS 60
Query: 366 ELKSLWLKEVKGMADRIIGMRTALKENLE 394
+ + W E+KGMADRII MR L + L+
Sbjct: 61 AMFNEWTVELKGMADRIISMRQQLFDALK 89
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.136 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,305,809
Number of extensions: 658251
Number of successful extensions: 1298
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1288
Number of HSP's successfully gapped: 7
Length of query: 463
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 359
Effective length of database: 11,605,545
Effective search space: 4166390655
Effective search space used: 4166390655
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)