Os02g0236000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Aspartate aminotransferase (EC 2.6.1.1) (Fragment).
FiT-DB / Search/ Help/ Sample detail
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Os02g0236000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Aspartate aminotransferase (EC 2.6.1.1) (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 88.24 | 0.441 | 11 | -0.403 | 0.527 | 1.12 | 0.213 | -3.2 | -0.343 | 0.648 | 29.52 | 370 | -- | -- |
| 91.58 | 0.446 | 11 | -0.691 | 0.487 | 0.93 | 0.298 | -- | -0.349 | 23.2 | 29.1 | 387 | -- | -- |
| 88.43 | 0.438 | 11 | -0.423 | 0.528 | 1.11 | -- | -3.09 | -0.347 | 0.693 | 29.51 | 370 | -- | -- |
| 90.41 | 0.443 | 11 | -0.685 | 0.496 | 0.767 | -- | -- | -0.314 | 0.589 | 29 | 353 | -- | -- |
| 105.92 | 0.479 | 11 | -0.423 | -- | 1.11 | -- | -2.54 | -0.347 | -- | 29.51 | 370 | -- | -- |
| 104.66 | 0.48 | 11 | -0.875 | 0.761 | -- | 0.161 | -- | -0.425 | 2.62 | -- | -- | -- | -- |
| 104.75 | 0.479 | 11 | -0.879 | 0.761 | -- | -- | -- | -0.426 | 2.63 | -- | -- | -- | -- |
| 101.89 | 0.47 | 11 | -0.634 | -- | 0.847 | -- | -- | -0.313 | -- | 28.4 | 256 | -- | -- |
| 104.61 | 0.476 | 11 | -- | 0.464 | 0.867 | -- | -- | -0.271 | 0.259 | 29 | 344 | -- | -- |
| 138.62 | 0.55 | 11 | -0.846 | -- | -- | -- | -- | -0.406 | -- | -- | -- | -- | -- |
| 125.11 | 0.523 | 11 | -- | 0.744 | -- | -- | -- | -0.328 | 2.61 | -- | -- | -- | -- |
| 113.97 | 0.497 | 11 | -- | -- | 0.858 | -- | -- | -0.23 | -- | 28.1 | 250 | -- | -- |
| 157.53 | 0.586 | 11 | -- | -- | -- | -- | -- | -0.312 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 78.96 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 14 |
| 2 | 79.15 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 5 | 14 |
| 15 | 82.53 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 4 | 5 |
| 19 | 82.87 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 5 | 3 |
| 20 | 82.90 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 26 | 83.08 | temperature | 30.0 | 270 | < th | dose independent | rect. | 17 | 20 |
| 36 | 83.68 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 14 | 5 |
| 44 | 84.04 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 14 | 6 |
| 50 | 84.15 | temperature | 15.0 | 90 | > th | dose independent | rect. | 19 | 19 |
| 64 | 84.51 | temperature | 30.0 | 270 | < th | dose independent | rect. | 17 | 10 |
| 70 | 84.77 | humidity | 60.0 | 270 | > th | dose independent | rect. | 17 | 10 |
| 81 | 85.03 | wind | 9.0 | 90 | < th | dose independent | rect. | 14 | 5 |
| 82 | 85.05 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 14 | 2 |
| 84 | 85.06 | radiation | 10.0 | 270 | < th | dose independent | rect. | 16 | 11 |
| 94 | 85.23 | wind | 1.0 | 90 | > th | dose independent | rect. | 14 | 5 |
| 97 | 85.29 | radiation | 40.0 | 90 | < th | dose independent | rect. | 14 | 5 |
| 102 | 85.34 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 16 | 11 |
| 103 | 85.36 | temperature | 15.0 | 10 | > th | dose independent | rect. | 20 | 18 |
| 106 | 85.38 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 14 | 5 |
| 107 | 85.38 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 14 | 5 |
| 109 | 85.39 | temperature | 10.0 | 90 | > th | dose independent | rect. | 14 | 5 |
| 111 | 85.39 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 14 | 5 |
| 115 | 85.39 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 19 | 19 |
| 121 | 85.46 | temperature | 25.0 | 10 | > th | dose independent | rect. | 14 | 6 |
| 122 | 85.47 | temperature | 25.0 | 90 | > th | dose independent | rect. | 14 | 5 |
| 127 | 85.51 | temperature | 15.0 | 90 | > th | dose independent | rect. | 19 | 10 |
| 128 | 85.52 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 15 | 5 |
| 131 | 85.52 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 20 | 19 |
| 140 | 85.64 | temperature | 30.0 | 270 | < th | dose independent | rect. | 8 | 14 |
| 142 | 85.64 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 21 | 21 |
| 149 | 85.72 | wind | 9.0 | 90 | < th | dose independent | rect. | 19 | 19 |
| 174 | 85.89 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 23 | 20 |
| 181 | 85.95 | temperature | 15.0 | 270 | > th | dose independent | rect. | 17 | 10 |
| 184 | 85.99 | wind | 9.0 | 270 | < th | dose independent | rect. | 3 | 14 |
| 207 | 86.18 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 231 | 86.34 | wind | 9.0 | 90 | < th | dose independent | rect. | 5 | 14 |
| 233 | 86.34 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 234 | 86.35 | temperature | 15.0 | 270 | > th | dose independent | rect. | 17 | 20 |
| 237 | 86.36 | radiation | 1.0 | 90 | < th | dose dependent | sin | 14 | NA |
| 242 | 86.41 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 19 | 19 |
| 243 | 86.41 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 19 | 19 |
| 244 | 86.41 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 19 | 19 |
| 247 | 86.45 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 24 | 11 |
| 250 | 86.46 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 14 | 5 |
| 253 | 86.48 | temperature | 25.0 | 720 | > th | dose independent | rect. | 5 | 3 |
| 254 | 86.48 | temperature | 15.0 | 270 | > th | dose independent | rect. | 16 | 22 |
| 277 | 86.70 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 14 |
| 278 | 86.70 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 14 |
| 298 | 86.83 | wind | 9.0 | 270 | < th | dose independent | rect. | 17 | 10 |
| 306 | 86.86 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 310 | 86.90 | temperature | 25.0 | 720 | > th | dose independent | rect. | 4 | 5 |
| 313 | 86.90 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 19 | 10 |
| 314 | 86.91 | wind | 9.0 | 270 | < th | dose independent | rect. | 14 | 2 |
| 315 | 86.91 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 14 | 6 |
| 317 | 86.91 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 14 | 6 |
| 322 | 86.95 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 17 | 10 |
| 325 | 86.96 | temperature | 25.0 | 270 | > th | dose independent | rect. | 14 | 2 |
| 326 | 86.96 | radiation | 1.0 | 90 | < th | dose independent | rect. | 19 | 10 |
| 329 | 86.97 | wind | 9.0 | 90 | < th | dose independent | rect. | 19 | 10 |
| 337 | 86.99 | temperature | 30.0 | 90 | < th | dose independent | rect. | 19 | 10 |
| 338 | 86.99 | humidity | 50.0 | 90 | > th | dose independent | rect. | 19 | 10 |
| 340 | 86.99 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 19 | 10 |
| 344 | 86.99 | temperature | 10.0 | 90 | > th | dose independent | rect. | 5 | 14 |
| 345 | 86.99 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 5 | 14 |
| 354 | 87.02 | wind | 1.0 | 270 | > th | dose independent | rect. | 14 | 2 |
| 364 | 87.06 | radiation | 30.0 | 270 | < th | dose independent | rect. | 22 | 10 |
| 367 | 87.06 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 21 | 11 |
| 370 | 87.08 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 14 |
| 372 | 87.08 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 14 |
| 389 | 87.14 | temperature | 10.0 | 270 | > th | dose independent | rect. | 14 | 2 |
| 391 | 87.14 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 14 | 2 |
| 395 | 87.15 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 16 | 4 |
| 407 | 87.19 | temperature | 30.0 | 270 | < th | dose independent | rect. | 7 | 7 |
| 410 | 87.20 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 14 | 2 |
| 412 | 87.20 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 14 | 2 |
| 421 | 87.24 | temperature | 15.0 | 90 | > th | dose independent | rect. | 19 | 8 |
| 428 | 87.26 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 21 | 11 |
| 444 | 87.32 | temperature | 15.0 | 720 | > th | dose dependent | sin | 5 | NA |
| 445 | 87.32 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 7 | 14 |
| 448 | 87.34 | temperature | 15.0 | 270 | > th | dose independent | rect. | 8 | 14 |
| 456 | 87.36 | humidity | 70.0 | 270 | > th | dose independent | rect. | 22 | 10 |
| 475 | 87.42 | wind | 1.0 | 10 | > th | dose independent | rect. | 14 | 6 |
| 482 | 87.44 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 5 | 14 |
| 484 | 87.44 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 490 | 87.45 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 23 | 21 |
| 497 | 87.47 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 14 | 6 |
| 504 | 87.48 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 19 | 8 |
| 522 | 87.53 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 14 | 5 |
| 535 | 87.58 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 544 | 87.60 | wind | 9.0 | 90 | < th | dose dependent | rect. | 14 | 5 |
| 546 | 87.61 | radiation | 1.0 | 270 | > th | dose independent | rect. | 14 | 2 |
| 568 | 87.67 | temperature | 30.0 | 270 | < th | dose independent | rect. | 7 | 19 |
| 570 | 87.68 | wind | 7.0 | 270 | < th | dose independent | rect. | 21 | 10 |
| 600 | 87.80 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 17 | 20 |
| 625 | 87.86 | radiation | 1.0 | 270 | > th | dose independent | rect. | 12 | 18 |
| 632 | 87.87 | radiation | 40.0 | 270 | < th | dose independent | rect. | 15 | 1 |
| 633 | 87.87 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 19 | 8 |
| 634 | 87.87 | temperature | 10.0 | 270 | > th | dose independent | rect. | 21 | 10 |
| 635 | 87.87 | temperature | 30.0 | 270 | < th | dose independent | rect. | 21 | 10 |
| 636 | 87.87 | humidity | 50.0 | 270 | > th | dose independent | rect. | 21 | 10 |
| 638 | 87.87 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 21 | 10 |
| 645 | 87.88 | radiation | 1.0 | 90 | < th | dose independent | sin | 13 | NA |
| 656 | 87.91 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 21 | 10 |
| 659 | 87.91 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 21 | 10 |
| 671 | 87.96 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 14 |
| 673 | 87.96 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 676 | 87.98 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 16 | 22 |
| 686 | 88.00 | temperature | 15.0 | 10 | > th | dose independent | rect. | 20 | 16 |
| 691 | 88.02 | radiation | 1.0 | 90 | > th | dose independent | sin | 13 | NA |
| 694 | 88.03 | humidity | 50.0 | 90 | > th | dose independent | rect. | 19 | 19 |
| 702 | 88.04 | radiation | 40.0 | 10 | < th | dose independent | rect. | 23 | 21 |
| 710 | 88.05 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 13 | 6 |
| 722 | 88.07 | wind | 9.0 | 270 | < th | dose independent | rect. | 16 | 22 |
| 728 | 88.08 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 19 | 10 |
| 742 | 88.13 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 13 | 7 |
| 745 | 88.13 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 20 | 17 |
| 748 | 88.13 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 20 | 17 |
| 756 | 88.16 | humidity | 90.0 | 90 | < th | dose independent | rect. | 14 | 5 |
| 757 | 88.16 | wind | 1.0 | 270 | > th | dose independent | rect. | 17 | 10 |
| 764 | 88.17 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 20 | 7 |
| 842 | 88.28 | wind | 9.0 | 270 | < th | dose independent | rect. | 17 | 20 |
| 846 | 88.28 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 24 | 20 |
| 871 | 88.36 | temperature | 30.0 | 10 | < th | dose independent | rect. | 20 | 18 |
| 884 | 88.38 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 10 | 22 |
| 886 | 88.39 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 20 | 18 |
| 889 | 88.39 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 20 | 18 |
| 893 | 88.40 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 19 | 15 |
| 909 | 88.44 | humidity | 50.0 | 90 | > th | dose independent | rect. | 14 | 5 |
| 910 | 88.44 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 19 | 10 |
| 911 | 88.44 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 19 | 10 |
| 921 | 88.46 | radiation | 1.0 | 270 | > th | dose independent | rect. | 12 | 7 |
| 940 | 88.49 | humidity | 50.0 | 270 | > th | dose independent | rect. | 17 | 20 |