BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0236000 Os02g0236000|AK070560
(432 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0236000 Similar to Aspartate aminotransferase (EC 2.6.... 846 0.0
Os06g0548000 Aspartate aminotransferase (EC 2.6.1.1) 796 0.0
AK107623 460 e-130
AK109721 431 e-121
Os01g0760600 Aspartate aminotransferase, cytoplasmic (EC 2.... 423 e-118
Os02g0797500 Similar to Plastidic aspartate aminotransferase 390 e-109
D10968 109 5e-24
>Os02g0236000 Similar to Aspartate aminotransferase (EC 2.6.1.1) (Fragment)
Length = 432
Score = 846 bits (2185), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/400 (100%), Positives = 400/400 (100%)
Query: 33 SLFGHVEPASKDPILGVTEAFLADPSPDKVNVGVGAYRDDNGKPVVLECVREAERRIAGN 92
SLFGHVEPASKDPILGVTEAFLADPSPDKVNVGVGAYRDDNGKPVVLECVREAERRIAGN
Sbjct: 33 SLFGHVEPASKDPILGVTEAFLADPSPDKVNVGVGAYRDDNGKPVVLECVREAERRIAGN 92
Query: 93 LNMEYLPMGGSIKMIEESLKLAYGEDSDFIKDKRIAAVQALSGTGACRLFADFQRRFLPN 152
LNMEYLPMGGSIKMIEESLKLAYGEDSDFIKDKRIAAVQALSGTGACRLFADFQRRFLPN
Sbjct: 93 LNMEYLPMGGSIKMIEESLKLAYGEDSDFIKDKRIAAVQALSGTGACRLFADFQRRFLPN 152
Query: 153 SQIYIPTPTWSNHHNIWRDAQVPQRTFTYYHPESRGLDFAGLMDDIKNAPNGSFFLLHAC 212
SQIYIPTPTWSNHHNIWRDAQVPQRTFTYYHPESRGLDFAGLMDDIKNAPNGSFFLLHAC
Sbjct: 153 SQIYIPTPTWSNHHNIWRDAQVPQRTFTYYHPESRGLDFAGLMDDIKNAPNGSFFLLHAC 212
Query: 213 AHNPTGVDPTEEQWREISYQFKIKNHFPFFDMAYQGFASGDPERDAKAIRIFLEDGHQIG 272
AHNPTGVDPTEEQWREISYQFKIKNHFPFFDMAYQGFASGDPERDAKAIRIFLEDGHQIG
Sbjct: 213 AHNPTGVDPTEEQWREISYQFKIKNHFPFFDMAYQGFASGDPERDAKAIRIFLEDGHQIG 272
Query: 273 CAQSYAKNMGLYGQRAGCLSILCEDEMQAVSVKSQLQQIARPMYSNPPVHGALVVSIILN 332
CAQSYAKNMGLYGQRAGCLSILCEDEMQAVSVKSQLQQIARPMYSNPPVHGALVVSIILN
Sbjct: 273 CAQSYAKNMGLYGQRAGCLSILCEDEMQAVSVKSQLQQIARPMYSNPPVHGALVVSIILN 332
Query: 333 DPELKSLWLKEVKGMADRIIGMRKALRENLEGLGSPLSWDHITNQIGMFCYSGMTPEQVD 392
DPELKSLWLKEVKGMADRIIGMRKALRENLEGLGSPLSWDHITNQIGMFCYSGMTPEQVD
Sbjct: 333 DPELKSLWLKEVKGMADRIIGMRKALRENLEGLGSPLSWDHITNQIGMFCYSGMTPEQVD 392
Query: 393 RLTNEYHIYMTRNGRISMAGVTTGNVAYLANAIHEVTKTK 432
RLTNEYHIYMTRNGRISMAGVTTGNVAYLANAIHEVTKTK
Sbjct: 393 RLTNEYHIYMTRNGRISMAGVTTGNVAYLANAIHEVTKTK 432
>Os06g0548000 Aspartate aminotransferase (EC 2.6.1.1)
Length = 463
Score = 796 bits (2056), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/400 (92%), Positives = 392/400 (98%)
Query: 33 SLFGHVEPASKDPILGVTEAFLADPSPDKVNVGVGAYRDDNGKPVVLECVREAERRIAGN 92
S FGHVEPA+KDPILGVTEAFLADPSPDKVNVGVGAYRDD+GKPVVLECVREAERRIAG+
Sbjct: 64 SWFGHVEPAAKDPILGVTEAFLADPSPDKVNVGVGAYRDDSGKPVVLECVREAERRIAGS 123
Query: 93 LNMEYLPMGGSIKMIEESLKLAYGEDSDFIKDKRIAAVQALSGTGACRLFADFQRRFLPN 152
+NMEYLPMGGSIKMIEESLKLAYGE+ +FIKDKRIAAVQALSGTGACRLFADFQ+RFLP+
Sbjct: 124 MNMEYLPMGGSIKMIEESLKLAYGENCEFIKDKRIAAVQALSGTGACRLFADFQKRFLPD 183
Query: 153 SQIYIPTPTWSNHHNIWRDAQVPQRTFTYYHPESRGLDFAGLMDDIKNAPNGSFFLLHAC 212
SQIYIPTPTW+NHHNIWRDAQVPQ+TFTYYHPESRGLDFAGLMDDIKNAP+GSFFLLHAC
Sbjct: 184 SQIYIPTPTWANHHNIWRDAQVPQKTFTYYHPESRGLDFAGLMDDIKNAPDGSFFLLHAC 243
Query: 213 AHNPTGVDPTEEQWREISYQFKIKNHFPFFDMAYQGFASGDPERDAKAIRIFLEDGHQIG 272
AHNPTGVDP+EEQWREIS+QFK+K HFPFFDMAYQGFASGDPERDAKAIRIFLEDGHQIG
Sbjct: 244 AHNPTGVDPSEEQWREISHQFKVKKHFPFFDMAYQGFASGDPERDAKAIRIFLEDGHQIG 303
Query: 273 CAQSYAKNMGLYGQRAGCLSILCEDEMQAVSVKSQLQQIARPMYSNPPVHGALVVSIILN 332
CAQSYAKNMGLYGQRAGCLSILC+DEMQAV+VKSQLQQIARP+YSNPPVHGAL+VS IL
Sbjct: 304 CAQSYAKNMGLYGQRAGCLSILCDDEMQAVAVKSQLQQIARPLYSNPPVHGALIVSTILG 363
Query: 333 DPELKSLWLKEVKGMADRIIGMRKALRENLEGLGSPLSWDHITNQIGMFCYSGMTPEQVD 392
DPELKSLWLKEVKGMADRIIGMR AL+ENLE LGSP+SW+HITNQIGMFCYSGMTPEQVD
Sbjct: 364 DPELKSLWLKEVKGMADRIIGMRTALKENLEKLGSPMSWEHITNQIGMFCYSGMTPEQVD 423
Query: 393 RLTNEYHIYMTRNGRISMAGVTTGNVAYLANAIHEVTKTK 432
RLT E+HIYMTRNGRISMAGVTTGNVAYLANAIHEVTKTK
Sbjct: 424 RLTKEFHIYMTRNGRISMAGVTTGNVAYLANAIHEVTKTK 463
>AK107623
Length = 432
Score = 460 bits (1183), Expect = e-130, Method: Compositional matrix adjust.
Identities = 222/400 (55%), Positives = 287/400 (71%), Gaps = 3/400 (0%)
Query: 33 SLFGHVEPASKDPILGVTEAFLADPSPDKVNVGVGAYRDDNGKPVVLECVREAERR-IAG 91
S + HV+ D ILGVTEAF D P K+N+GVGAYRD+NGKP VL VR+AE I
Sbjct: 32 STWAHVKAGPPDAILGVTEAFKRDQDPRKINLGVGAYRDENGKPYVLPSVRQAEELVITS 91
Query: 92 NLNMEYLPMGGSIKMIEESLKLAYGEDSDFIKDKRIAAVQALSGTGACRLFADFQRRFLP 151
+ EYLP+ G + + LAYG+DS +K+ RIA Q++SGTGA R+ F +R P
Sbjct: 92 KGDKEYLPITGLADFTKNAAILAYGKDSAPVKENRIAITQSISGTGALRIGGAFLQRHYP 151
Query: 152 NSQ-IYIPTPTWSNHHNIWRDAQVPQRTFTYYHPESRGLDFAGLMDDIKNAPNGSFFLLH 210
++ IY+PTP+W NH I+RD+ + + + YY ++ GLDF G++DDIK AP GS LLH
Sbjct: 152 EAKSIYLPTPSWGNHTPIFRDSGLEVKQYRYYDKKTVGLDFKGMIDDIKAAPAGSIVLLH 211
Query: 211 ACAHNPTGVDPTEEQWREISYQFKIKNHFPFFDMAYQGFASGDPERDAKAIRIFLEDGHQ 270
ACAHNPTGVDPT EQW+EIS K K HFPFFDMAYQGFASGD ++DA A+R F+ +GHQ
Sbjct: 212 ACAHNPTGVDPTVEQWKEISNVVKEKGHFPFFDMAYQGFASGDTDKDAFAVRHFVSEGHQ 271
Query: 271 IGCAQSYAKNMGLYGQRAGCLSILCEDEMQAVSVKSQLQQIARPMYSNPPVHGALVVSII 330
I +QS+AKNMGLYG+R G S++C D + V SQ++ I RP+YSNPP+HGA + + I
Sbjct: 272 IALSQSFAKNMGLYGERVGAFSVVCADPDERARVDSQIKIIVRPLYSNPPMHGAKIAATI 331
Query: 331 LNDPELKSLWLKEVKGMADRIIGMRKALRENL-EGLGSPLSWDHITNQIGMFCYSGMTPE 389
L D +L WL EVKGMADRI GMR L+ L E L S L+WDHITNQIGMF + G++PE
Sbjct: 332 LADQQLYQQWLGEVKGMADRINGMRSTLKNLLVEDLNSKLNWDHITNQIGMFAFLGISPE 391
Query: 390 QVDRLTNEYHIYMTRNGRISMAGVTTGNVAYLANAIHEVT 429
QV +L NE+H+Y+T +GRIS+AG+T NV +LA ++H+VT
Sbjct: 392 QVAKLVNEHHVYLTGDGRISVAGITNHNVKHLAESLHKVT 431
>AK109721
Length = 419
Score = 431 bits (1109), Expect = e-121, Method: Compositional matrix adjust.
Identities = 204/398 (51%), Positives = 283/398 (71%), Gaps = 2/398 (0%)
Query: 35 FGHVEPASKDPILGVTEAFLADPSPDKVNVGVGAYRDDNGKPVVLECVREAERRIA-GNL 93
+ +V+ A DPILGVT+AF D +P+K+N+GVGAYRDDNGKP VLECV++AE+++A NL
Sbjct: 22 WTNVKMAPPDPILGVTDAFKRDKNPNKINLGVGAYRDDNGKPYVLECVKKAEKQLAEQNL 81
Query: 94 NMEYLPMGGSIKMIEESLKLAYGEDSDFIKDKRIAAVQALSGTGACRLFADFQRRFLPNS 153
+ EY + G E +++L G+DS IK+K Q +SGTG R+ +F R++ P +
Sbjct: 82 DKEYTQITGVSDFCEAAVRLLLGDDSPAIKNKLYGVAQTISGTGGLRVGFEFLRKYSPYA 141
Query: 154 Q-IYIPTPTWSNHHNIWRDAQVPQRTFTYYHPESRGLDFAGLMDDIKNAPNGSFFLLHAC 212
+ +++PTPTW NH I D+ + + YY P +RG DF G ++D+ P + LL +C
Sbjct: 142 KTVWMPTPTWGNHGPIANDSTFEVKYYRYYKPSNRGFDFEGCLEDLNKIPEKNVILLQSC 201
Query: 213 AHNPTGVDPTEEQWREISYQFKIKNHFPFFDMAYQGFASGDPERDAKAIRIFLEDGHQIG 272
AHNPTGVDPT+EQW+EIS+ K + FPF D AYQGFASGD +RDA A R+F DGH+
Sbjct: 202 AHNPTGVDPTQEQWKEISHVIKKRQLFPFLDTAYQGFASGDIDRDAFAPRLFARDGHEFI 261
Query: 273 CAQSYAKNMGLYGQRAGCLSILCEDEMQAVSVKSQLQQIARPMYSNPPVHGALVVSIILN 332
AQS++KNMGLYG+R G +S + D+ + SQL+ R +YSNPP HGA V + +L
Sbjct: 262 VAQSFSKNMGLYGERVGTVSFVVNDKQDLERILSQLRVTIRRLYSNPPRHGAQVAARVLT 321
Query: 333 DPELKSLWLKEVKGMADRIIGMRKALRENLEGLGSPLSWDHITNQIGMFCYSGMTPEQVD 392
P+L++LWLKEVK MADRII MR L +NL+ GS +W HIT+QIGMFC++G+ +QV+
Sbjct: 322 QPDLRALWLKEVKLMADRIITMRSTLVDNLKKEGSKHNWQHITDQIGMFCFTGLQEKQVE 381
Query: 393 RLTNEYHIYMTRNGRISMAGVTTGNVAYLANAIHEVTK 430
RL ++ +Y+T++GRIS+AGV++ N AYLA+AIHEVTK
Sbjct: 382 RLIKDFSVYLTKDGRISIAGVSSKNNAYLAHAIHEVTK 419
>Os01g0760600 Aspartate aminotransferase, cytoplasmic (EC 2.6.1.1) (Transaminase
A)
Length = 460
Score = 423 bits (1088), Expect = e-118, Method: Compositional matrix adjust.
Identities = 208/403 (51%), Positives = 277/403 (68%), Gaps = 3/403 (0%)
Query: 33 SLFGHVEPASKDPILGVTEAFLADPSPDKVNVGVGAYRDDNGKPVVLECVREAERRIAGN 92
S+F + A +DPILGVT A+ DPSP KVN+GVGAYR + GKP+VL VR AE+ + N
Sbjct: 58 SVFAGLAQAPEDPILGVTVAYNKDPSPVKVNLGVGAYRTEEGKPLVLNVVRRAEQMLINN 117
Query: 93 LN--MEYLPMGGSIKMIEESLKLAYGEDSDFIKDKRIAAVQALSGTGACRLFADFQRRFL 150
+ EYLP+ G + S KL +G DS I++ R+A VQ LSGTG+ R+ +F R
Sbjct: 118 PSRVKEYLPITGLADFNKLSAKLIFGADSPAIQENRVATVQCLSGTGSLRVGGEFLARHY 177
Query: 151 PNSQIYIPTPTWSNHHNIWRDAQVPQRTFTYYHPESRGLDFAGLMDDIKNAPNGSFFLLH 210
IYIP PTW NH ++ A + R++ YY P +RGLDF GL++D+ +AP+G+ LLH
Sbjct: 178 HERTIYIPQPTWGNHPKVFTLAGLTVRSYRYYDPATRGLDFQGLLEDLGSAPSGAIVLLH 237
Query: 211 ACAHNPTGVDPTEEQWREISYQFKIKNHFPFFDMAYQGFASGDPERDAKAIRIFLEDGHQ 270
ACAHNPTGVDPT +QW +I + K PFFD AYQGFASG ++DA+++R+F+ DG +
Sbjct: 238 ACAHNPTGVDPTLDQWEQIRQLMRSKALLPFFDSAYQGFASGSLDQDAQSVRMFVADGGE 297
Query: 271 IGCAQSYAKNMGLYGQRAGCLSILCEDEMQAVSVKSQLQQIARPMYSNPPVHGALVVSII 330
+ AQSYAKNMGLYG+R G LSI+C AV V+SQL+ + RPMYSNPP+HGA +V+ I
Sbjct: 298 LLMAQSYAKNMGLYGERVGALSIVCGSADVAVRVESQLKLVIRPMYSNPPIHGASIVATI 357
Query: 331 LNDPELKSLWLKEVKGMADRIIGMRKALRENLEGLGSPLSWDHITNQIGMFCYSGMTPEQ 390
L D + + W E+KGMADRII MR+ L + L+ +P W HI QIGMF ++G+ +Q
Sbjct: 358 LKDSAMFNEWTVELKGMADRIISMRQQLFDALKTRETPGDWSHIIKQIGMFTFTGLNSDQ 417
Query: 391 VDRLTNEYHIYMTRNGRISMAGVTTGNVAYLANAIH-EVTKTK 432
V + EYHIYMT +GRISMAG++ + +LA+AIH VTK K
Sbjct: 418 VAFMRQEYHIYMTSDGRISMAGLSGRTIPHLADAIHAAVTKLK 460
>Os02g0797500 Similar to Plastidic aspartate aminotransferase
Length = 458
Score = 390 bits (1003), Expect = e-109, Method: Compositional matrix adjust.
Identities = 187/395 (47%), Positives = 270/395 (68%), Gaps = 2/395 (0%)
Query: 33 SLFGHVEPASKDPILGVTEAFLADPSPDKVNVGVGAYRDDNGKPVVLECVREAER-RIAG 91
S F V A DPILGV+EAF AD + K+N+GVGAYR + +P VL V++AE +
Sbjct: 56 SRFEGVPMAPPDPILGVSEAFKADQNDLKLNLGVGAYRTEELQPYVLNVVKKAETLMLEK 115
Query: 92 NLNMEYLPMGGSIKMIEESLKLAYGEDSDFIKDKRIAAVQALSGTGACRLFADFQRRFLP 151
N EYLP+ G + + +L +G D+ +K R+A +Q+LSGTG+ RL A F +R+ P
Sbjct: 116 GENKEYLPIEGLAAFNKATAELLFGADNPVLKQGRVATLQSLSGTGSLRLAAAFIQRYFP 175
Query: 152 NSQIYIPTPTWSNHHNIWRDAQVPQRTFTYYHPESRGLDFAGLMDDIKNAPNGSFFLLHA 211
+++ I +PTW NH NI+ DA+VP + YY P++ GLDF G++ DI+ AP+GSF LLH
Sbjct: 176 EAKVLISSPTWGNHKNIFNDAKVPWSEYRYYDPKTVGLDFEGMIADIQAAPDGSFVLLHG 235
Query: 212 CAHNPTGVDPTEEQWREISYQFKIKNHFPFFDMAYQGFASGDPERDAKAIRIFLEDGHQI 271
CAHNPTG+DPT EQW +I+ + K H PFFD+AYQGFASG + DA ++R+F++ G ++
Sbjct: 236 CAHNPTGIDPTPEQWEKIADVIQEKKHMPFFDVAYQGFASGSLDEDASSVRLFVQRGLEV 295
Query: 272 GCAQSYAKNMGLYGQRAGCLSILCEDEMQAVSVKSQLQQIARPMYSNPPVHGALVVSIIL 331
AQSY+KN+GLY +R G ++++C A VKSQL+++ARPMYSNPP+HGA +V+ ++
Sbjct: 296 FVAQSYSKNLGLYAERIGAINVVCSTPEVANRVKSQLKRLARPMYSNPPIHGARIVANVV 355
Query: 332 NDPELKSLWLKEVKGMADRIIGMRKALRENLEGL-GSPLSWDHITNQIGMFCYSGMTPEQ 390
DP + W +E++ MA RI +R+ L ++L S W I QIGMF Y+G+ Q
Sbjct: 356 GDPTMFGEWKQEMEEMAGRIKNVRQKLYDSLSAKDDSGKDWSFILRQIGMFSYTGLNKTQ 415
Query: 391 VDRLTNEYHIYMTRNGRISMAGVTTGNVAYLANAI 425
D +T+++HIYMT++GRIS+AG++ YLA+AI
Sbjct: 416 SDNMTDKWHIYMTKDGRISLAGLSLAKCEYLADAI 450
>D10968
Length = 102
Score = 109 bits (272), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 52/89 (58%), Positives = 66/89 (74%)
Query: 275 QSYAKNMGLYGQRAGCLSILCEDEMQAVSVKSQLQQIARPMYSNPPVHGALVVSIILNDP 334
QSYAKNMGLYG+R G LSI+C AV V+SQL+ + RPMYSNPP+HGA +V+ IL D
Sbjct: 1 QSYAKNMGLYGERVGALSIVCGSADVAVRVESQLKLVIRPMYSNPPIHGASIVATILKDS 60
Query: 335 ELKSLWLKEVKGMADRIIGMRKALRENLE 363
+ + W E+KGMADRII MR+ L + L+
Sbjct: 61 AMFNEWTVELKGMADRIISMRQQLFDALK 89
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.136 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,786,822
Number of extensions: 648259
Number of successful extensions: 1162
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1154
Number of HSP's successfully gapped: 7
Length of query: 432
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 328
Effective length of database: 11,605,545
Effective search space: 3806618760
Effective search space used: 3806618760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)